24 citations · 40 across the 9 of their papers we have counts for
12 papers
Stochastic Models of Regulation of Transcription in Biological Cells
Vincent Fromion, Philippe Robert, Jana Zaherddine
In this paper we study an important global regulation mechanism of transcription of biological cells using specific macro-molecules, 6S RNAs. The functional property of 6S RNAs is…
Qualitative Behavior of a Metabolic Pathway with Hybrid Feedback
Claudia Lopez-Zazueta, Vincent Fromion
We study the qualitative behavior of a model to represent local regulation in a metabolic network. The model is based on the end-product control structure introduced in [A. Goelzer…
A RBA model for the chemostat modeling
Marc Dinh, Vincent Fromion
The purpose of this paper is to show that it is possible to replace Monod's type model of a chemostat by a constraint based model of bacteria at the genome scale. This new model is…
Automated generation of bacterial resource allocation models
Ana Bulović, Stephan Fischer, Marc Dinh +7
Resource Balance Analysis (RBA) is a computational method based on resource allocation, which performs accurate quantitative predictions of whole-cell states (i.e. growth rate, met…
Models of protein production along the cell cycle: an investigation of possible sources of noise
Renaud Dessalles, Vincent Fromion, Philippe Robert
In this article, we quantitatively study, through stochastic models, the efects of several intracellular phenomena, such as cell volume growth, cell division, gene replication as w…
RBA like problem with thermo-kinetics is non convex
M. Dinh, V. Fromion
The aim of this short note is to show that the class of problem involving kinetic or thermo-kinetic constraints in addition to the usual stoechiometric one is non convex.