155 citations · 1k across the 40 of their papers we have counts for
7 papers · 1 filter
BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis
Can Firtina, Jisung Park, Mohammed Alser +8
Generating the hash values of short subsequences, called seeds, enables quickly identifying similarities between genomic sequences by matching seeds with a single lookup of their h…
FPGA-Based Near-Memory Acceleration of Modern Data-Intensive Applications
Gagandeep Singh, Mohammed Alser, Damla Senol Cali +4
Modern data-intensive applications demand high computation capabilities with strict power constraints. Unfortunately, such applications suffer from a significant waste of both exec…
SIMDRAM: An End-to-End Framework for Bit-Serial SIMD Computing in DRAM
Nastaran Hajinazar, Geraldo F. Oliveira, Sven Gregorio +7
Processing-using-DRAM has been proposed for a limited set of basic operations (i.e., logic operations, addition). However, in order to enable full adoption of processing-using-DRAM…
IChannels: Exploiting Current Management Mechanisms to Create Covert Channels in Modern Processors
Jawad Haj-Yahya, Jeremie S. Kim, A. Giray Yaglikci +5
To operate efficiently across a wide range of workloads with varying power requirements, a modern processor applies different current management mechanisms, which briefly throttle…
pLUTo: Enabling Massively Parallel Computation in DRAM via Lookup Tables
João Dinis Ferreira, Gabriel Falcao, Juan Gómez-Luna +8
Data movement between the main memory and the processor is a key contributor to execution time and energy consumption in memory-intensive applications. This data movement bottlenec…
GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
Zülal Bingöl, Mohammed Alser, Onur Mutlu +2
At the last step of short read mapping, the candidate locations of the reads on the reference genome are verified to compute their differences from the corresponding reference segm…