activity
20162026
most citedTechnology dictates algorithms: Recent developments in read alignment

155 citations · 1k across the 40 of their papers we have counts for

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Showing 2020Show all

7 papers · 1 filter

cs.AR2020

SIMDRAM: A Framework for Bit-Serial SIMD Processing Using DRAM

Nastaran Hajinazar, Geraldo F. Oliveira, Sven Gregorio +7

Processing-using-DRAM has been proposed for a limited set of basic operations (i.e., logic operations, addition). However, in order to enable the full adoption of processing-using-…

cs.AR2020

NATSA: A Near-Data Processing Accelerator for Time Series Analysis

Ivan Fernandez, Ricardo Quislant, Christina Giannoula +5

Time series analysis is a key technique for extracting and predicting events in domains as diverse as epidemiology, genomics, neuroscience, environmental sciences, economics, and m…

cs.AR2020★ 84 cited

Accelerating Genome Analysis: A Primer on an Ongoing Journey

Mohammed Alser, Zülal Bingöl, Damla Senol Cali +4

Genome analysis fundamentally starts with a process known as read mapping, where sequenced fragments of an organism's genome are compared against a reference genome. Read mapping i…

cs.AR2020

FlexWatts: A Power- and Workload-Aware Hybrid Power Delivery Network for Energy-Efficient Microprocessors

Jawad Haj-Yahya, Mohammed Alser, Jeremie S. Kim +5

Modern client processors typically use one of three commonly-used power delivery network (PDN): 1) motherboard voltage regulators (MBVR), 2) integrated voltage regulators (IVR), an…

cs.AR2020★ 2 cited

GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis

Damla Senol Cali, Gurpreet S. Kalsi, Zülal Bingöl +13

Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. U…

cs.AR2020★ 2 cited

SysScale: Exploiting Multi-domain Dynamic Voltage and Frequency Scaling for Energy Efficient Mobile Processors

Jawad Haj-Yahya, Mohammed Alser, Jeremie Kim +4

There are three domains in a modern thermally-constrained mobile system-on-chip (SoC): compute, IO, and memory. We observe that a modern SoC typically allocates a fixed power budge…