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cond-mat.soft2002
Enumerating Designing Sequences in the HP Model
Anders Irbäck, Carl Troein
The hydrophobic/polar HP model on the square lattice has been widely used to investigate basics of protein folding. In the cases where all designing sequences (sequences with uniqu…
cond-mat.soft2001
Folding of a Small Helical Protein Using Hydrogen Bonds and Hydrophobicity Forces
Giorgio Favrin, Anders Irbäck, Stefan Wallin
A reduced protein model with five to six atoms per amino acid and five amino acid types is developed and tested on a three-helix-bundle protein, a 46-amino acid fragment from staph…