133 citations · 458 across the 17 of their papers we have counts for
17 papers
Folding lattice proteins confined on minimal grids using a quantum-inspired encoding
Anders Irbäck, Lucas Knuthson, Sandipan Mohanty
Steric clashes pose a challenge when exploring dense protein systems using conventional explicit-chain methods. A minimal example is a single lattice protein confined on a minimal…
Finite-size scaling analysis of protein droplet formation
Daniel Nilsson, Anders Irbäck
The formation of biomolecular condensates inside cells often involve intrinsically disordered proteins (IDPs), and several of these IDPs are also capable of forming droplet-like de…
Fitting a function to time-dependent ensemble averaged data
Karl Fogelmark, Michael A. Lomholt, Anders Irback +1
Time-dependent ensemble averages, i.e., trajectory-based averages of some observable, are of importance in many fields of science. A crucial objective when interpreting such data i…
Aggregate geometry in amyloid fibril nucleation
A. Irbäck, S. Æ. Jónsson, N. Linnemann +2
We present and study a minimal structure-based model for the self-assembly of peptides into ordered beta-sheet-rich fibrils. The peptides are represented by unit-length sticks on a…
Microscopic Mechanism of Specific Peptide Adhesion to Semiconductor Substrates
Michael Bachmann, Karsten Goede, Annette G. Beck-Sickinger +3
The design of hybrid peptide-solid interfaces for nanotechnological applications such as biomolecular nanoarrays requires a deep understanding of the basic mechanisms of peptide bi…
An effective all-atom potential for proteins
Anders Irbäck, Simon Mitternacht, Sandipan Mohanty
We describe and test an implicit solvent all-atom potential for simulations of protein folding and aggregation. The potential is developed through studies of structural and thermod…