Encoder-Decoder Neural Networks in Interpretation of X-ray Spectra
arXiv:2406.14044 · doi:10.1016/j.elspec.2024.147498
Abstract
Encoder--decoder neural networks (EDNN) condense information most relevant to the output of the feedforward network to activation values at a bottleneck layer. We study the use of this architecture in emulation and interpretation of simulated X-ray spectroscopic data with the aim to identify key structural characteristics for the spectra, previously studied using emulator-based component analysis (ECA). We find an EDNN to outperform ECA in covered target variable variance, but also discover complications in interpreting the latent variables in physical terms. As a compromise of the benefits of these two approaches, we develop a network where the linear projection of ECA is used, thus maintaining the beneficial characteristics of vector expansion from the latent variables for their interpretation. These results underline the necessity of information recovery after its condensation and identification of decisive structural degrees of freedom for the output spectra for a justified interpretation.
References in corpus (10)
- Scikit-learn: Machine Learning in Python
- Relativistic separable dual-space Gaussian Pseudopotentials from H to Rn
- CP2K: An Electronic Structure and Molecular Dynamics Software Package -- Quickstep: Efficient and Accurate Electronic Structure Calculations
- Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
- Noise Reduction in X-ray Photon Correlation Spectroscopy with Convolutional Neural Networks Encoder-Decoder Models
- Towards Structural Reconstruction from X-Ray Spectra
- Emulator-based Decomposition for Structural Sensitivity of Core-level Spectra
- Machine learning in interpretation of electronic core-level spectra
- Information Bottleneck in Peptide Conformation Determination by X-ray Absorption Spectroscopy
- Structural Descriptors and Information Extraction from X-ray Emission Spectra: Aqueous Sulfuric Acid