Compressing and forecasting atomic material simulations with descriptors
arXiv:2309.02242 · doi:10.1103/PhysRevLett.131.236101
Abstract
Atomic simulations of material microstructure require significant resources to generate, store and analyze. Here, atomic descriptor functions are proposed as a general latent space to compress atomic microstructure, ideal for use in large-scale simulations. Descriptors can regress a broad range of properties, including character-dependent dislocation densities, stress states or radial distribution functions. A vector autoregressive model can generate trajectories over yield points, resample from new initial conditions and forecast trajectory futures. A forecast confidence, essential for practical application, is derived by propagating forecasts through the Mahalanobis outlier distance, providing a powerful tool to assess coarse-grained models. Application to nanoparticles and yielding of dislocation networks confirms low uncertainty forecasts are accurate and resampling allows for the propagation of smooth microstructure distributions. Yielding is associated with a collapse in the intrinsic dimension of the descriptor manifold, which is discussed in relation to the yield surface.
arXiv comment13 pages, 13 figures
References in corpus (29)
- Double-slit photoelectron interference in strong-field ionization of the neon dimer
- Escaping free-energy minima
- Gaussian Approximation Potentials: the accuracy of quantum mechanics, without the electrons
- A Data-Driven Approximation of the Koopman Operator: Extending Dynamic Mode Decomposition
- E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentials
- Moment Tensor Potentials: a class of systematically improvable interatomic potentials
- Machine Learning of Accurate Energy-Conserving Molecular Force Fields
- A Spectral Analysis Method for Automated Generation of Quantum-Accurate Interatomic Potentials
- Machine Learning Unifies the Modelling of Materials and Molecules
- Active learning of linearly parametrized interatomic potentials
- Shrinkage Algorithms for MMSE Covariance Estimation
- Probing the ultimate limits of metal plasticity
- Estimating the intrinsic dimension of datasets by a minimal neighborhood information
- Uncovering electron scattering mechanisms in NiFeCoCrMn derived concentrated solid solution and high entropy alloys
- Coarse-Graining Auto-Encoders for Molecular Dynamics
- Displacement cascades and defects annealing in tungsten, Part I: defect database from molecular dynamics simulations
- Dislocation Networks and the Microstructural Origin of Strain Hardening
- A Topological Framework for Local Structure Analysis in Condensed Matter
- Scikit-dimension: a Python package for intrinsic dimension estimation
- Stochastic resonance-free multiple time-step algorithm for molecular dynamics with very large time steps
- Observation of transient and asymptotic driven structural states of tungsten exposed to irradiation
- Complete topology of cells, grains, and bubbles in three-dimensional microstructures
- Atomic Permutationally Invariant Polynomials for Fitting Molecular Force Fields
- Mechanical annealing of model glasses: Effects of strain amplitude and temperature
- Landau theory of crystal plasticity
- DADApy: Distance-based Analysis of DAta-manifolds in Python
- Self-optimized construction of transition rate matrices from accelerated atomistic simulations with Bayesian uncertainty quantification
- Exploring the robust extrapolation of high-dimensional machine learning potentials
- Exploring glassy dynamics with Markov state models from graph dynamical neural networks