Self-supervised learning of hologram reconstruction using physics consistency
arXiv:2209.08288 · doi:10.1038/s42256-023-00704-7
Abstract
The past decade has witnessed transformative applications of deep learning in various computational imaging, sensing and microscopy tasks. Due to the supervised learning schemes employed, these methods mostly depend on large-scale, diverse, and labeled training data. The acquisition and preparation of such training image datasets are often laborious and costly, also leading to biased estimation and limited generalization to new sample types. Here, we report a self-supervised learning model, termed GedankenNet, that eliminates the need for labeled or experimental training data, and demonstrate its effectiveness and superior generalization on hologram reconstruction tasks. Without prior knowledge about the sample types to be imaged, the self-supervised learning model was trained using a physics-consistency loss and artificial random images that are synthetically generated without any experiments or resemblance to real-world samples. After its self-supervised training, GedankenNet successfully generalized to experimental holograms of various unseen biological samples, reconstructing the phase and amplitude images of different types of objects using experimentally acquired test holograms. Without access to experimental data or knowledge of real samples of interest or their spatial features, GedankenNet's self-supervised learning achieved complex-valued image reconstructions that are consistent with the Maxwell's equations, and its output inference and object solutions accurately represent the wave propagation in free-space. GedankenNet framework also exhibits resilience to random, unknown perturbations in the physical forward model, including changes in the hologram distances, pixel size and illumination wavelength. This self-supervised learning of image reconstruction tasks creates new opportunities for various inverse problems in holography, microscopy and computational imaging fields.
arXiv comment45 pages, 6 Figures
References in corpus (28)
- PyTorch: An Imperative Style, High-Performance Deep Learning Library
- Fourier Neural Operator for Parametric Partial Differential Equations
- Phase recovery and holographic image reconstruction using deep learning in neural networks
- Deep learning-based virtual histology staining using auto-fluorescence of label-free tissue
- Deep Learning Microscopy
- Deep-STORM: super-resolution single-molecule microscopy by deep learning
- PhaseStain: Digital staining of label-free quantitative phase microscopy images using deep learning
- DeepSTORM3D: dense three dimensional localization microscopy and point spread function design by deep learning
- Extended depth-of-field in holographic image reconstruction using deep learning based auto-focusing and phase-recovery
- Deep learning-based transformation of the H&E stain into special stains
- Low Photon Count Phase Retrieval Using Deep Learning
- Digital synthesis of histological stains using micro-structured and multiplexed virtual staining of label-free tissue
- Deep learning enhanced mobile-phone microscopy
- Phase Imaging with Computational Specificity (PICS) for measuring dry mass changes in sub-cellular compartments
- Probabilistic Noise2Void: Unsupervised Content-Aware Denoising
- Cross-modality deep learning brings bright-field microscopy contrast to holography
- Deep learning-based super-resolution in coherent imaging systems
- Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
- HoloStain: Holographic virtual staining of individual biological cells
- Holographic image reconstruction with phase recovery and autofocusing using recurrent neural networks
- Noise2Fast: Fast Self-Supervised Single Image Blind Denoising
- Single-shot autofocusing of microscopy images using deep learning
- PhaseGAN: A deep-learning phase-retrieval approach for unpaired datasets
- Deep learning approach to coherent noise reduction in optical diffraction tomography
- Recurrent neural network-based volumetric fluorescence microscopy
- Virtual staining of defocused autofluorescence images of unlabeled tissue using deep neural networks
- Few-shot Transfer Learning for Holographic Image Reconstruction using a Recurrent Neural Network
- eFIN: Enhanced Fourier Imager Network for generalizable autofocusing and pixel super-resolution in holographic imaging
Cited by in corpus (10)
- On the use of deep learning for phase recovery
- Multiplane Quantitative Phase Imaging Using a Wavelength-Multiplexed Diffractive Optical Processor
- All-optical complex field imaging using diffractive processors
- Deep learning phase recovery: data-driven, physics-driven, or combining both?
- eFIN: Enhanced Fourier Imager Network for generalizable autofocusing and pixel super-resolution in holographic imaging
- A robust and scalable framework for hallucination detection in virtual tissue staining and digital pathology
- Neural Network-Based Processing and Reconstruction of Compromised Biophotonic Image Data
- Physics-guided hierarchical neural networks for Maxwell's equations in plasmonic metamaterials
- OAH-Net: A Deep Neural Network for Hologram Reconstruction of Off-axis Digital Holographic Microscope
- Self-supervised physics-informed generative networks for phase retrieval from a single X-ray hologram