Discovering sparse control strategies in C. elegans
arXiv:2108.00837 · doi:10.1371/journal.pcbi.1010072
Abstract
Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology, and though experiments that probe internal states are developing rapidly, organismal complexity presents a fundamental obstacle given the many possible ways internal states could map to behavior. Using C. elegans as an example, we propose a protocol for systematic perturbation of neural states that limits experimental complexity but still characterizes collective aspects of the neural-behavioral map. We consider experimentally motivated small perturbations -- ones that are most likely to preserve natural dynamics and are closer to internal control mechanisms -- to neural states and their impact on collective neural behavior. Then, we connect such perturbations to the local information geometry of collective statistics, which can be fully characterized using pairwise perturbations. Applying the protocol to a minimal model of C. elegans neural activity, we find that collective neural statistics are most sensitive to a few principal perturbative modes. Dominant eigenvalues decay initially as a power law, unveiling a hierarchy that arises from variation in individual neural activity and pairwise interactions. Highest-ranking modes tend to be dominated by a few, "pivotal" neurons that account for most of the system's sensitivity, suggesting a sparse mechanism for control of collective behavior.
References in corpus (24)
- Weak pairwise correlations imply strongly correlated network states in a neural population
- Direct-coupling analysis of residue co-evolution captures native contacts across many protein families
- Identification of direct residue contacts in protein-protein interaction by message passing
- Simultaneous whole-animal 3D-imaging of neuronal activity using light field microscopy
- Dimensionality and dynamics in the behavior of C. elegans
- Whole-brain calcium imaging with cellular resolution in freely behaving C. elegans
- The physics of brain network structure, function, and control
- Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light
- Parameter Space Compression Underlies Emergent Theories and Predictive Models
- Structure-based control of complex networks with nonlinear dynamics
- Searching for collective behavior in a network of real neurons
- The geometry of nonlinear least squares with applications to sloppy models and optimization
- Why are nonlinear fits so challenging?
- Pairwise maximum entropy models for studying large biological systems: when they can and when they can't work
- Coarse--graining, fixed points, and scaling in a large population of neurons
- The simplest maximum entropy model for collective behavior in a neural network
- Finding influential nodes for integration in brain networks using optimal percolation theory
- Adaptive, locally-linear models of complex dynamics
- Searching for collective behavior in a small brain
- Statistical mechanics of the US Supreme Court
- On the sufficiency of pairwise interactions in maximum entropy models of biological networks
- Fibration symmetries uncover the building blocks of biological networks
- The basis of easy controllability in Boolean networks
- Symmetry group factorization reveals the structure-function relation in the neural connectome of Caenorhabditis elegans