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q-bio.PEMar 22, 2021
1
citations (OpenAlex)
authors
  • Guillaume Achaz
  • Julien Dutheil
institutions
  • Museo de Historia Natural
arXiv abstractPDF
paper

Correlated evolution: models and methods

arXiv:2103.11809

Abstract

In this article, we review the different models and methods to understand and estimate correlated evolution within the same genome, individual or species. We describe correlated evolution among traits, among genetic components and finally between traits and genetics.

References in corpus (6)

  • Direct-coupling analysis of residue co-evolution captures native contacts across many protein families
  • Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
  • Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1
  • Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners
  • Inter-residue, inter-protein and inter-family coevolution: bridging the scales
  • Inferring interaction partners from protein sequences using mutual information
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