A Simple Sublinear Algorithm for Gap Edit Distance

Abstract

We study the problem of estimating the edit distance between two $n$-character strings. While exact computation in the worst case is believed to require near-quadratic time, previous work showed that in certain regimes it is possible to solve the following {\em gap edit distance} problem in sub-linear time: distinguish between inputs of distance $\le k$ and $>k^2$. Our main result is a very simple algorithm for this benchmark that runs in time $\tilde{O}(n/\sqrt{k})$, and in particular settles the open problem of obtaining a truly sublinear time for the entire range of relevant $k$. Building on the same framework, we also obtain a $k$-vs-$k^2$ algorithm for the one-sided preprocessing model with $\tilde{O}(n)$ preprocessing time and $\tilde{O}(n/k)$ query time (improving over a recent $\tilde{O}(n/k+k^2)$-query time algorithm for the same problem [GRS'20].

26 pages

References in corpus (1)

• Finding monotone patterns in sublinear time