Leveraging large-deviation statistics to decipher the stochastic properties of measured trajectories
arXiv:2005.02099 · doi:10.1088/1367-2630/abd50e
Abstract
Extensive time-series encoding the position of particles such as viruses, vesicles, or individual proteins are routinely garnered in single-particle tracking experiments or supercomputing studies. They contain vital clues on how viruses spread or drugs may be delivered in biological cells. Similar time-series are being recorded of stock values in financial markets and of climate data. Such time-series are most typically evaluated in terms of time-average mean-squared displacements, which remain random variables for finite measurement times. Their statistical properties are different for different physical stochastic processes, thus allowing us to extract valuable information on the stochastic process itself. To exploit the full potential of the statistical information encoded in measured time-series we here propose an easy-to-implement and computationally inexpensive new methodology, based on deviations of the time-averaged mean-squared displacement from its ensemble average counterpart. Specifically, we use the upper bound of these deviations for Brownian motion to check the applicability of this approach to simulated and real data sets. By comparing the probability of deviations for different data sets, we demonstrate how the theoretical bound for Brownian motion reveals additional information about observed stochastic processes. We apply the large-deviation method to data sets of tracer beads tracked in aqueous solution, tracer beads measured in mucin hydrogels, and of geographic surface temperature anomalies. Our analysis shows how the large-deviation properties can be efficiently used as a simple yet effective routine test to reject the Brownian motion hypothesis and unveil crucial information on statistical properties such as ergodicity breaking and short-time correlations.
arXiv comment16 pages, 11 figures, RevTeX
References in corpus (37)
- Measuring Information Transfer
- The large deviation approach to statistical mechanics
- Anomalous transport in the crowded world of biological cells
- Superstatistics
- In vivo anomalous diffusion and weak ergodicity breaking of lipid granules
- Brownian yet non-Gaussian diffusion: from superstatistics to subordination of diffusing diffusivities
- Ergodic Properties of Fractional Brownian-Langevin Motion
- Langevin equations for continuous time Lévy flights
- Anomalous diffusion of phospholipids and cholesterols in a lipid bilayer and its origins
- Quantitative analysis of single particle trajectories: mean maximal excursion method
- Scaled Brownian motion: a paradoxical process with a time dependent diffusivity for the description of anomalous diffusion
- Computation of extreme heat waves in climate models using a large deviation algorithm
- Multiple Excitation of Confined Graphene Plasmons by Single Free Electrons
- Machine learning method for single trajectory characterization
- Spectral content of a single non-Brownian trajectory
- Inferring diffusion in single live cells at the single molecule level
- Measurement of Anomalous Diffusion Using Recurrent Neural Networks
- Packets of Diffusing Particles Exhibit Universal Exponential Tails
- Noisy continuous time random walks
- Anomalous transport effects on switching currents of graphene-based Josephson junctions
- Power spectral density of a single Brownian trajectory: What one can and cannot learn from it
- Josephson-based threshold detector for Lévy distributed fluctuations
- Anomalous diffusion in time-fluctuating non-stationary diffusivity landscapes
- Quantifying the non-ergodicity of scaled Brownian motion
- Continuous Time Random Walks (CTRWs): Simulation of continuous trajectories
- Superstatistical Brownian motion
- Brownian motion and beyond: first-passage, power spectrum, non-Gaussianity, and anomalous diffusion
- Duality Between Relaxation and First Passage in Reversible Markov Dynamics: Rugged Energy Landscapes Disentangled
- Spectral theory of fluctuations in time-average statistical mechanics of reversible and driven systems
- Random coefficient autoregressive processes describe Brownian yet non-Gaussian diffusion in heterogeneous systems
- Codifference can detect ergodicity breaking and non-Gaussianity
- Large deviations for multi-scale jump-diffusion processes
- Molecular theory of anomalous diffusion
- Bayesian inference with information content model check for Langevin equations
- Superdiffusion dominates intracellular particle motion in the supercrowded space of pathogenic Acanthamoeba castellanii
- Gumbel Central Limit Theorem for Max-Min and Min-Max
- Poisson-process limit-laws yield Gumbel Max-Min and Min-Max
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- Multifractional Brownian motion with telegraphic, stochastically varying exponent
- Occupation time of a system of Brownian particles on the line with steplike initial condition
- Objective comparison of methods to decode anomalous diffusion
- Preface: Characterisation of Physical Processes from Anomalous Diffusion Data
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- Classification of anomalous diffusion in animal movement data using power spectral analysis