PANNA: Properties from Artificial Neural Network Architectures
arXiv:1907.03055 · doi:10.1016/j.cpc.2020.107402
Abstract
Prediction of material properties from first principles is often a computationally expensive task. Recently, artificial neural networks and other machine learning approaches have been successfully employed to obtain accurate models at a low computational cost by leveraging existing example data. Here, we present a software package "Properties from Artificial Neural Network Architectures" (PANNA) that provides a comprehensive toolkit for creating neural network models for atomistic systems. Besides the core routines for neural network training, it includes data parser, descriptor builder and force-field generator suitable for integration within molecular dynamics packages. PANNA offers a variety of activation and cost functions, regularization methods, as well as the possibility of using fully-connected networks with custom size for each atomic species. PANNA benefits from the optimization and hardware-flexibility of the underlying TensorFlow engine which allows it to be used on multiple CPU/GPU/TPU systems, making it possible to develop and optimize neural network models based on large datasets.
arXiv commentSource code: https://gitlab.com/PANNAdevs/panna
References in corpus (30)
- Adam: A Method for Stochastic Optimization
- Advanced capabilities for materials modelling with Quantum ESPRESSO
- Neural Message Passing for Quantum Chemistry
- Gaussian Approximation Potentials: the accuracy of quantum mechanics, without the electrons
- Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties
- On representing chemical environments
- Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
- Deep Potential Molecular Dynamics: a scalable model with the accuracy of quantum mechanics
- SchNet - a deep learning architecture for molecules and materials
- DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamics
- ANI-1: An extensible neural network potential with DFT accuracy at force field computational cost
- Two-dimensional materials from high-throughput computational exfoliation of experimentally known compounds
- PhysNet: A Neural Network for Predicting Energies, Forces, Dipole Moments and Partial Charges
- By-passing the Kohn-Sham equations with machine learning
- Universal Fragment Descriptors for Predicting Electronic Properties of Inorganic Crystals
- Machine Learning of Molecular Electronic Properties in Chemical Compound Space
- How to represent crystal structures for machine learning: towards fast prediction of electronic properties
- Machine learning a general purpose interatomic potential for silicon
- ANI-1: A data set of 20M off-equilibrium DFT calculations for organic molecules
- WACSF - Weighted Atom-Centered Symmetry Functions as Descriptors in Machine Learning Potentials
- A Transferable Machine-Learning Model of the Electron Density
- sGDML: Constructing Accurate and Data Efficient Molecular Force Fields Using Machine Learning
- Accurate Interatomic Force Fields via Machine Learning with Covariant Kernels
- A Machine Learning Potential for Graphene
- Coarse-Graining Auto-Encoders for Molecular Dynamics
- Silicon liquid structure and crystal nucleation from ab-initio deep Metadynamics
- Graph Dynamical Networks for Unsupervised Learning of Atomic Scale Dynamics in Materials
- Wavelet Scattering Regression of Quantum Chemical Energies
- Building machine learning force fields for nanoclusters
- Deep Neural Network Computes Electron Densities and Energies of a Large Set of Organic Molecules Faster than Density Functional Theory (DFT)
Cited by in corpus (13)
- GPUMD: A package for constructing accurate machine-learned potentials and performing highly efficient atomistic simulations
- Improving the accuracy of the neuroevolution machine learning potential for multi-component systems
- A Deep Dive into Machine Learning Density Functional Theory for Materials Science and Chemistry
- Data-driven simulation and characterisation of gold nanoparticle melting
- The Evolution of Machine Learning Potentials for Molecules, Reactions and Materials
- Efficient implementation of atom-density representations
- Developments and Further Applications of Ephemeral Data Derived Potentials
- KLIFF: A framework to develop physics-based and machine learning interatomic potentials
- A collinear-spin machine learned interatomic potential for FeCrNi alloy
- Size and Quality of Quantum Mechanical Data Sets for Training Neural Network Force Fields for Liquid Water
- Fortnet, a software package for training Behler-Parrinello neural networks
- Convergence of Body-Orders in Linear Atomic Cluster Expansions
- REANN: A PyTorch-based End-to-End Multi-functional Deep Neural Network Package for Molecular, Reactive and Periodic Systems