On the formalization of Asynchronous First Passage Algorithms

Abstract

The formalization of First Passage schemes is revisited and the emerging of a conceptual contradiction is underlined. We then show why, despite such a contradiction, the numerical results are not explicitly affected. Through a different formalization of the problem, we recast the current principles of the algorithm in a more solid conceptual framework, and numerical evidence gives further justification to our claims.

References in corpus (3)

• Accelerated kinetic Monte Carlo algorithm for diffusion limited kinetics
• An efficient multi-scale Green's Functions Reaction Dynamics scheme
• The lower bound on the precision of transcriptional regulation