Combining Metadynamics and Integrated Tempering Sampling
arXiv:1807.10486 · doi:10.1021/acs.jpclett.8b03005
Abstract
The simulation of rare events is one of the key problems in atomistic simulations. Towards its solution a plethora of methods have been proposed. Here we combine two such methods metadynamics and inte-grated tempering sampling. In metadynamics the fluctuations of a carefully chosen collective variable are amplified, while in integrated tempering sampling the system is pushed to visit an approximately uniform interval of energies and allows exploring a range of temperatures in a single run. We describe our ap-proach and apply it to the two prototypical systems a SN2 chemical reaction and to the freezing of silica. The combination of metadynamics and integrated tempering sampling leads to a powerful method. In par-ticular in the case of silica we have measured more than one order of magnitude acceleration.
References in corpus (6)
- Canonical sampling through velocity-rescaling
- Escaping free-energy minima
- An efficient, multiple range random walk algorithm to calculate the density of states
- A Variational Approach to Enhanced Sampling and Free Energy Calculations
- Enhanced Sampling in the Well-Tempered Ensemble
- Combine Umbrella Sampling with Integrated Tempering Method for Efficient and Accurate Calculation of Free Energy Changes of Complex Energy Surface
Cited by in corpus (10)
- Enhanced sampling methods for molecular dynamics simulations
- A Unified Approach to Enhanced Sampling
- Homogeneous nucleation of ice
- Gaussian Mixture Based Enhanced Sampling
- Multithermal-multibaric molecular simulations from a variational principle
- Phase equilibrium of liquid water and hexagonal ice from enhanced sampling molecular dynamics simulations
- Simulated Tempering Method in the Infinite Switch Limit with Adaptive Weight Learning
- Atomistic View of Homogeneous Nucleation of Water into Polymorphic Ices
- A Generalized Nucleation Theory for Ice Crystallization
- A Sinking Approach to Explore Arbitrary Areas in Free Energy Landscapes