Topological data analysis of contagion maps for examining spreading processes on networks
arXiv:1408.1168 · doi:10.1038/ncomms8723
Abstract
Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth's surface; however, in modern contagions long-range edges -- for example, due to airline transportation or communication media -- allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct "contagion maps" that use multiple contagions on a network to map the nodes as a point cloud. By analyzing the topology, geometry, and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modeling, forecast, and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks.
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References in corpus (12)
- Epidemic processes in complex networks
- Hierarchical structure and the prediction of missing links in networks
- Prediction and predictability of global epidemics: the role of the airline transportation network
- Missing and spurious interactions and the reconstruction of complex networks
- Sustaining the Internet with Hyperbolic Mapping
- Self-similarity of complex networks and hidden metric spaces
- A survey of dimensionality reduction techniques
- The acceleration of evolutionary spread by long-range dispersal
- Think Locally, Act Locally: The Detection of Small, Medium-Sized, and Large Communities in Large Networks
- Dynamical Systems on Networks: A Tutorial
- Global Spatio-temporal Patterns of Influenza in the Post-pandemic Era
- Elementary processes governing the evolution of road networks
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