SLiM: Simulating Evolution with Selection and Linkage
arXiv:1301.3109
Abstract
SLiM is an efficient forward population genetic simulation designed for studying the effects of linkage and selection on a chromosome-wide scale. The program can incorporate complex scenarios of demography and population substructure, various models for selection and dominance of new mutations, arbitrary gene and chromosomal structure, and user-defined recombination maps.
SLiM is a C++ command line program freely available under the GNU GPL license from http://www.stanford.edu/~messer/software. A comprehensive documentation for SLiM can be downloaded from the program website