Mean-field theory for the inverse Ising problem at low temperatures
arXiv:1204.5375 · doi:10.1103/PhysRevLett.109.050602
Abstract
The large amounts of data from molecular biology and neuroscience have lead to a renewed interest in the inverse Ising problem: how to reconstruct parameters of the Ising model (couplings between spins and external fields) from a number of spin configurations sampled from the Boltzmann measure. To invert the relationship between model parameters and observables (magnetisations and correlations) mean-field approximations are often used, allowing to determine model parameters from data. However, all known mean-field methods fail at low temperatures with the emergence of multiple thermodynamic states. Here we show how clustering spin configurations can approximate these thermodynamic states, and how mean-field methods applied to thermodynamic states allow an efficient reconstruction of Ising models also at low temperatures.
References in corpus (11)
- Weak pairwise correlations imply strongly correlated network states in a neural population
- Identification of direct residue contacts in protein-protein interaction by message passing
- Gibbs States and the Set of Solutions of Random Constraint Satisfaction Problems
- High-dimensional Ising model selection using -regularized logistic regression
- Inverse Ising inference using all the data
- Adaptive Cluster Expansion for Inferring Boltzmann Machines with Noisy Data
- Statistical physics of pairwise probability models
- Small-correlation expansions for the inverse Ising problem
- Bethe-Peierls approximation and the inverse Ising model
- Spin Domains Generate Hierarchical Ground State Structure in J=+/-1 Spin Glasses
- Inference and learning in sparse systems with multiple states
Cited by in corpus (30)
- Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
- Data Based Identification and Prediction of Nonlinear and Complex Dynamical Systems
- Inverse statistical problems: from the inverse Ising problem to data science
- Inverse Statistical Physics of Protein Sequences: A Key Issues Review
- Pseudolikelihood Decimation Algorithm Improving the Inference of the Interaction Network in a General Class of Ising Models
- Global warming: Temperature estimation in annealers
- On the sufficiency of pairwise interactions in maximum entropy models of biological networks
- Learning and inference in a nonequilibrium Ising model with hidden nodes
- Universal structural estimator and dynamics approximator for complex networks
- U.S. stock market interaction network as learned by the Boltzmann Machine
- Improving landscape inference by integrating heterogeneous data in the inverse Ising problem
- Solving the inverse Ising problem by mean-field methods in a clustered phase space with many states
- Inference of the sparse kinetic Ising model using the decimation method
- Inverse Ising inference with correlated samples
- Regularization and decimation pseudolikelihood approaches to statistical inference in -spin models
- Financial interaction networks inferred from traded volumes
- Resummed mean-field inference for strongly coupled data
- Learning phase transitions from regression uncertainty: A new regression-based machine learning approach for automated detection of phases of matter
- Inverse problem for multi-species mean field models in the low temperature phase
- Network inference in the non-equilibrium steady state
- Inverse problem for the mean-field monomer-dimer model with attractive interaction
- Inference for interacting linear waves in ordered and random media
- Pairwise MRF Calibration by Perturbation of the Bethe Reference Point
- Inverse Ising inference from high-temperature re-weighting of observations
- The inverse problem beyond two-body interaction: the cubic mean-field Ising model
- Active image restoration
- Reveal flocking phase transition of self-propelled active particles by machine learning regression uncertainty
- On the role of non-linear latent features in bipartite generative neural networks
- Data quality for the inverse Ising problem
- State assignment problem in systems biology and medicine: on the importance of state interaction network topology