Probing microscopic origins of confined subdiffusion by first-passage observables

Abstract

Subdiffusive motion of tracer particles in complex crowded environments, such as biological cells, has been shown to be widepsread. This deviation from brownian motion is usually characterized by a sublinear time dependence of the mean square displacement (MSD). However, subdiffusive behavior can stem from different microscopic scenarios, which can not be identified solely by the MSD data. In this paper we present a theoretical framework which permits to calculate analytically first-passage observables (mean first-passage times, splitting probabilities and occupation times distributions) in disordered media in any dimensions. This analysis is applied to two representative microscopic models of subdiffusion: continuous-time random walks with heavy tailed waiting times, and diffusion on fractals. Our results show that first-passage observables provide tools to unambiguously discriminate between the two possible microscopic scenarios of subdiffusion. Moreover we suggest experiments based on first-passage observables which could help in determining the origin of subdiffusion in complex media such as living cells, and discuss the implications of anomalous transport to reaction kinetics in cells.

21 pages, 3 figures. Submitted version

References in corpus (4)

• First-passage times in complex scale-invariant media
• Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential
• Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary
• Occupation times of random walks in confined geometries: From random trap model to diffusion limited reactions

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