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most citedThe Liver Tumor Segmentation Benchmark (LiTS)

1.2k citations

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10 papers · 1 filter

q-bio.QM2025★ 1 cited

Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort

Muhammed Furkan Dasdelen, Ivan Kukuljan, Peter Lienemann +6

Peripheral blood smears remain a cornerstone in the diagnosis of hematological neoplasms, offering rapid and valuable insights that inform subsequent diagnostic steps. However, sin…

q-bio.QM2024★ 3 cited

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt

Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari +28

Quantitative mass spectrometry has revolutionized proteomics by enabling simultaneous quantification of thousands of proteins. Pooling patient-derived data from multiple institutio…

q-bio.QM2024★ 10 cited

Non-Negative Universal Differential Equations With Applications in Systems Biology

Maren Philipps, Antonia Körner, Jakob Vanhoefer +2

Universal differential equations (UDEs) leverage the respective advantages of mechanistic models and artificial neural networks and combine them into one dynamic model. However, th…

q-bio.QM2023★ 58 cited

pyPESTO: A modular and scalable tool for parameter estimation for dynamic models

Yannik Schälte, Fabian Fröhlich, Paul J. Jost +14

Mechanistic models are important tools to describe and understand biological processes. However, they typically rely on unknown parameters, the estimation of which can be challengi…

q-bio.QM2021★ 13 cited

Dynamical models for metabolomics data integration

Polina Lakrisenko, Daniel Weindl

As metabolomics datasets are becoming larger and more complex, there is an increasing need for model-based data integration and analysis to optimally leverage these data. Dynamical…

q-bio.QM2021★ 15 cited

Prenatal stress perturbs fetal iron homeostasis in a sex-specific manner

Peter Zimmermann, Marta C. Antonelli, Ritika Sharma +7

What is the influence of chronic maternal prenatal stress (PS) on fetal iron homeostasis? In a prospective case-control study in 164 pregnant women, we show that cord blood transfe…