74 citations · 192 across the 36 of their papers we have counts for
38 papers
Applications of Neural Cellular Automata: State of the Art, Challenges and Opportunities
Nick Lemke, Niklas Ihm, John Kalkhof +11
Neural Cellular Automata (NCAs) are a new type of neural network architecture which enable accurate and robust inference at extremely small model sizes. Recently, NCAs have advance…
MorphoOrgaAgent: A Foundation-Model-Based Multi-Agent System for Autonomous Organoid Analysis
Hanyi Zhang, Maximilian Hoermann, Lion J. Gleiter +5
Organoids are three-dimensional tissue models whose morphology provides important insights into tumor development, disease progression, and drug testing. Extracting these morpholog…
3D Masked Autoencoders are Robust Learners of Volumetric and Multimodal Cellular Representations for Microscopy
Amirhossein Kardoost, Lion Gleiter, Tingying Peng +1
Self-supervised learning in fluorescence microscopy often relies on 2D projections, despite the inherently three-dimensional nature of cells. We present a systematic comparison of…
HASSL: Hierarchy-Aware Self-Supervised Learning Framework for Single Cell Microscopy
Julius Riel, Vishwa Mohan Singh, Sai Anirudh Aryasomayajula +10
Hierarchical structure is common in image data, where fine-grained clusters often merge into larger, coarser semantic groups. In biological cell images, current self-supervised lea…
QG-MIL: A Gated Transformer Aggregator for Domain-Agnostic Multiple Instance Learning in Medical Imaging
Luca Zedda, Davide Antonio Mura, Cecilia Di Ruberto +4
Attention-based Multiple Instance Learning aggregators in medical imaging are prone to attention concentration, producing overconfident and unstable predictions. We introduce QG-MI…
Genetically Aligned Patient Representations Improve Hematological Diagnosis
Muhammed Furkan Dasdelen, Fatih Ozlugedik, Ilaria Looser +3
Multimodal alignment of histopathology encoders with transcriptomic and genomic data has been shown to significantly improve performance in downstream diagnostic tasks. Hematologic…