205 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Indiana UniversityUS4 papers
- Eötvös Loránd UniversityHU3 papers
- ETH ZurichCH3 papers
- Indiana University BloomingtonUS3 papers
- University of California, Los AngelesUS3 papers
- University of KansasUS3 papers
- Russian Academy of SciencesRU2 papers
- Schmidt Institute of Physics of the EarthRU2 papers
- Stowers Institute for Medical ResearchUS2 papers
- University of FloridaUS2 papers
- University of ManchesterGB2 papers
- University of MinnesotaUS2 papers
21 papers
Ultrafast dynamics of a spin-polarized electron plasma with magnetic ions
Benjamin Bakri, Nicolas Crouseilles, Paul-Antoine Hervieux +2
We construct a mean-field model that describes the nonlinear dynamics of a spin-polarized electron gas interacting with fixed, positively-charged ions possessing a magnetic moment…
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science
Betina Idnay, Zihan Xu, William G. Adams +54
This study reports a comprehensive environmental scan of the generative AI (GenAI) infrastructure in the national network for clinical and translational science across 36 instituti…
Augmenting Pathologists with NaviPath: Design and Evaluation of a Human-AI Collaborative Navigation System
Hongyan Gu, Chunxu Yang, Mohammad Haeri +7
Artificial Intelligence (AI) brings advancements to support pathologists in navigating high-resolution tumor images to search for pathology patterns of interest. However, existing…
An Integer GARCH model for a Poisson process with time varying zero-inflation
Isuru Ratnayake, V. A. Samaranayake
A time-varying zero-inflated serially dependent Poisson process is proposed. The model assumes that the intensity of the Poisson Process evolves according to a generalized autoregr…
Colonoscopy Polyp Detection and Classification: Dataset Creation and Comparative Evaluations
Kaidong Li, Mohammad I. Fathan, Krushi Patel +6
Colorectal cancer (CRC) is one of the most common types of cancer with a high mortality rate. Colonoscopy is the preferred procedure for CRC screening and has proven to be effectiv…
A Comparative Study on Polyp Classification using Convolutional Neural Networks
Krushi Patel, Kaidong Li, Ke Tao +4
Colorectal cancer is the third most common cancer diagnosed in both men and women in the United States. Most colorectal cancers start as a growth on the inner lining of the colon o…
COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model
Jingqi Wang, Noor Abu-el-rub, Josh Gray +8
The COVID-19 pandemic swept across the world rapidly, infecting millions of people. An efficient tool that can accurately recognize important clinical concepts of COVID-19 from fre…
A machine learning approach to using Quality-of-Life patient scores in guiding prostate radiation therapy dosing
Zhijian Yang, Daniel Olszewski, Chujun He +5
Thanks to advancements in diagnosis and treatment, prostate cancer patients have high long-term survival rates. Currently, an important goal is to preserve quality-of-life during a…
Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster
Danny E. Miller, Kevin R. Cook, Nazanin Yeganehkazemi +4
Multiply inverted balancer chromosomes that suppress exchange with their homologs are an essential part of the genetic toolkit in Drosophila melanogaster. Despite their widespread…
Multiple Testing with Heterogeneous Multinomial Distributions
Joshua Habiger, David Watts, Michael Anderson
False discovery rate (FDR) procedures provide misleading inference when testing multiple null hypotheses with heterogeneous multinomial data. For example, in the motivating study t…
Dynamics of Wolbachia pipientis gene expression across the Drosophila melanogaster life cycle
Florence Gutzwiller, Catarina R. Carmo, Danny E. Miller +5
Symbiotic interactions between microbes and their multicellular hosts have manifold impacts on molecular, cellular and organismal biology. To identify candidate bacterial genes inv…
Time Scales in Epidemiological Analysis: An Empirical Comparison
Prabhakar Chalise, Eric Chicken, Daniel McGee
The Cox proportional hazards model is routinely used to analyze time-to-event data. To use this model requires the definition of a unique well-defined time scale. Most often, obser…
Cell resolved, multiparticle model of plastic tissue deformations and morphogenesis
Andras Czirok, Dona Greta Isai
We propose a three dimensional mechanical model of embryonic tissue dynamics. Mechanically coupled adherent cells are represented as particles interconnected with elastic beams whi…
Network-based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis
Wei Zhang, Jae-Woong Chang, Lilong Lin +6
High-throughput mRNA sequencing (RNA-Seq) is widely used for transcript quantification of gene isoforms. Since RNA-Seq data alone is often not sufficient to accurately identify the…
Anomalous segregation dynamics of self-propelled particles
Enys Mones, András Czirók, Tamás Vicsek
A number of novel experimental and theoretical results have recently been obtained on active soft matter, demonstrating the various interesting universal and anomalous features of…
Towards a Probabilistic Definition of Seizures
Ivan Osorio, Alexey Lyubushin, Didier Sornette
This writing: a) Draws attention to the intricacies inherent to the pursuit of a universal seizure definition even when powerful, well understood signal analysis methods are utiliz…
Automated Seizure Detection: Unrecognized Challenges, Unexpected Insights
Ivan Osorio, Alexey Lyubushin, Didier Sornette
One of epileptology's fundamental aims is the formulation of a universal, internally consistent seizure definition. To assess this aim's feasibility, three signal analysis methods…
Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length
Elisabeth Fischer-Friedrich, Giovanni Meacci, Joe Lutkenhaus +2
Self-organization of proteins in space and time is of crucial importance for the functioning of cellular processes. Often, this organization takes place in the presence of strong r…
Epileptic Seizures: Quakes of the brain?
Ivan Osorio, Mark G. Frei, Didier Sornette +2
The concept of universality proposes that dynamical systems with the same power law behaviors are equivalent at large scales. We test this hypothesis on the Earth's crust and the e…
Network formation of tissue cells via preferential attraction to elongated structures
Andras Szabo, Erica D. Perryn, Andras Czirok
Vascular and non-vascular cells often form an interconnected network in vitro, similar to the early vascular bed of warm blooded embryos. Our time-lapse recordings show that the ne…
Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth
Roeland M. H. Merks, Erica D. Perryn, Abbas Shirinifard +1
Blood vessels form either when dispersed endothelial cells (the cells lining the inner walls of fully-formed blood vessels) organize into a vessel network (vasculogenesis), or by s…