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5 papers · 2 filters
Analytic Partition Function Zeros of the Wako-Saito-Munoz-Eaton beta-hairpin Model
Julian Lee
An analytic formula for the density of states of Wako-Saito-Munoz-Eaton model, for a simple class of beta-hairpins, is obtained. Under certain simplifying assumptions on the struct…
Microcanonical Origin of the Maximum Entropy Principle for Open Systems
Julian Lee
The canonical ensemble describes an open system in equilibrium with a heat bath of fixed temperature. The probability distribution of such a system, the Boltzmann distribution, is…
A derivation of the master equation from path entropy maximization
Julian Lee, Steve Pressé
The master equation and, more generally, Markov processes are routinely used as models for stochastic processes. They are often justified on the basis of randomization and coarse-g…
Exact Partition Function Zeros of a Polymer on a Simple-Cubic Lattice
Jae Hwan Lee, Seung-Yeon Kim, Julian Lee
We study conformational transitions of a polymer on a simple-cubic lattice by calculating the zeros of the exact partition function, up to chain length 24. In the complex temperatu…
Collapse transition of a square-lattice polymer with next nearest-neighbor interaction
Jae Hwan Lee, Seung-Yeon Kim, Julian Lee
We study the collapse transition of a polymer on a square lattice with both nearest-neighbor and next nearest-neighbor interactions, by calculating the exact partition function zer…