244 citations
- National Oceanic and Atmospheric AdministrationUS4 papers
- University of WashingtonUS2 papers
- Bielefeld UniversityDE1 paper
- Centre d'Écologie Fonctionnelle et ÉvolutiveFR1 paper
- Centre National de la Recherche ScientifiqueFR1 paper
- CSIRO Oceans and AtmosphereAU1 paper
- Howard Hughes Medical InstituteUS1 paper
- IfremerFR1 paper
- Institut Universitaire Européen de la MerFR1 paper
- Laboratoire des Sciences de l'Environnement MarinFR1 paper
- NOAA National Marine Fisheries ServiceUS1 paper
- University of California, IrvineUS1 paper
4 papers
Uncovering ecological state dynamics with hidden Markov models
Brett T. McClintock, Roland Langrock, Olivier Gimenez +4
Ecological systems can often be characterised by changes among a finite set of underlying states pertaining to individuals, populations, communities, or entire ecosystems through t…
Horseshoe-based Bayesian nonparametric estimation of effective population size trajectories
James R. Faulkner, Andrew F. Magee, Beth Shapiro +1
Phylodynamics is an area of population genetics that uses genetic sequence data to estimate past population dynamics. Modern state-of-the-art Bayesian nonparametric methods for rec…
Locally adaptive smoothing with Markov random fields and shrinkage priors
James R. Faulkner, Vladimir N. Minin
We present a locally adaptive nonparametric curve fitting method that operates within a fully Bayesian framework. This method uses shrinkage priors to induce sparsity in order-k di…
Computation of Standardized Residuals for MARSS Models
Elizabeth Eli Holmes
This report shows how to compute the variance of the joint conditional model and state residuals for multivariate autoregressive Gaussian state-space (MARSS) models. The MARSS mode…