86 citations
- University of ChileCL5 papers
- Universidad Diego PortalesCL3 papers
- University of PisaIT3 papers
- Dalhousie UniversityCA2 papers
- California Institute of TechnologyUS1 paper
- Institute of Informatics and TelematicsIT1 paper
- Johns Hopkins UniversityUS1 paper
- Lodz University of TechnologyPL1 paper
- Pontificia Universidad Católica de ValparaísoCL1 paper
- Universidad Andrés BelloCL1 paper
- Universidade Estadual de Campinas (UNICAMP)BR1 paper
- Università degli Studi del Piemonte Orientale “Amedeo Avogadro”IT1 paper
8 papers
A multi-group SEIRA model for the spread of COVID-19 among heterogeneous populations
Sebastian Contreras, H. Andres Villavicencio, David Medina-Ortiz +2
The outbreak and propagation of COVID-19 have posed a considerable challenge to modern society. In particular, the different restrictive actions taken by governments to prevent the…
Cell cycle and protein complex dynamics in discovering signaling pathways
Daniel Inostroza, Cecilia Hernández, Diego Seco +2
Signaling pathways are responsible for the regulation of cell processes, such as monitoring the external environment, transmitting information across membranes, and making cell fat…
Matching reads to many genomes with the -index
Taher Mun, Alan Kuhnle, Christina Boucher +3
The -index is a tool for compressed indexing of genomic databases for exact pattern matching, which can be used to completely align reads that perfectly match some part of a gen…
Universal Compressed Text Indexing
Gonzalo Navarro, Nicola Prezza
The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits tex…
Burrows-Wheeler transform and LCP array construction in constant space
Felipe A. Louza, Travis Gagie, Guilherme P. Telles
In this article we extend the elegant in-place Burrows-Wheeler transform (BWT) algorithm proposed by Crochemore et al. (Crochemore et al., 2015). Our extension is twofold: we first…
Efficient and Compact Representations of Some Non-Canonical Prefix-Free Codes
Antonio Fariña, Travis Gagie, Szymon Grabowski +3
For many kinds of prefix-free codes there are efficient and compact alternatives to the traditional tree-based representation. Since these put the codes into canonical form, howeve…