output
20152022
most citedAn image representation based convolutional network for DNA classification

28 citations

9 papers

q-bio.QM2022★ 1 cited

Cophylogeny Reconstruction Allowing for Multiple Associations Through Approximate Bayesian Computation

Blerina Sinaimeri, Laura Urbini, Marie-France Sagot +1

Phylogenetic tree reconciliation is employed for the examination of coevolution between host and symbiont species. An important concern is the requirement for dependable cost value…

math.CO2021

On the domination number of -constrained de Bruijn graphs

Tiziana Calamoneri, Angelo Monti, Blerina Sinaimeri

Motivated by the work on the domination number of directed de Bruijn graphs and some of its generalizations, in this paper we introduce a natural generalization of de Bruijn graphs…

math.CO2021★ 2 cited

On Generalizations of Pairwise Compatibility Graphs

Tiziana Calamoneri, Manuel Lafond, Angelo Monti +1

A graph is a pairwise compatibility graph (PCG) if there exists an edge-weighted tree and an interval , such that each leaf of the tree is a vertex of the graph, and there i…

cs.DS2018

Longest Property-Preserved Common Factor

Lorraine A. K Ayad, Giulia Bernardini, Roberto Grossi +4

In this paper we introduce a new family of string processing problems. We are given two or more strings and we are asked to compute a factor common to all strings that preserves a…

cs.DS2018

Decremental SPQR-trees for Planar Graphs

Jacob Holm, Giuseppe F. Italiano, Adam Karczmarz +2

We present a decremental data structure for maintaining the SPQR-tree of a planar graph subject to edge contractions and deletions. The update time, amortized over operation…

cs.LG2018★ 28 cited

An image representation based convolutional network for DNA classification

Bojian Yin, Marleen Balvert, Davide Zambrano +2

The folding structure of the DNA molecule combined with helper molecules, also referred to as the chromatin, is highly relevant for the functional properties of DNA. The chromatin…

cs.CC2017★ 10 cited

Efficient enumeration of solutions produced by closure operations

Arnaud Mary, Yann Strozecki

In this paper we address the problem of generating all elements obtained by the saturation of an initial set by some operations. More precisely, we prove that we can generate the c…

math.CO2016★ 12 cited

Bounding the order of a graph using its diameter and metric dimension: a study through tree decompositions and VC dimension

Laurent Beaudou, Florent Foucaud, Peter Dankelmann +3

The metric dimension of a graph is the minimum size of a set of vertices such that each vertex is uniquely determined by the distances to the vertices of that set. Our aim is to up…

cs.CC2015★ 10 cited

Efficient enumeration of solutions produced by closure operations

Arnaud Mary, Yann Strozecki

In this paper we address the problem of generating all elements obtained by the saturation of an initial set by some operations. More precisely, we prove that we can generate the c…