58 citations
- Friedrich Schiller University JenaDE2 papers
- GSI Helmholtz Centre for Heavy Ion ResearchDE2 papers
- Helmholtz Institute JenaDE2 papers
- Wismar University of Applied SciencesDE2 papers
- Carl Zeiss (Germany)DE1 paper
- Center for Systems BiologyUS1 paper
- ETH ZurichCH1 paper
- Fraunhofer Institute for Applied Optics and Precision EngineeringDE1 paper
- Harvard UniversityUS1 paper
- Helmholtz MunichDE1 paper
- Hochschule MittweidaDE1 paper
- Jena University HospitalDE1 paper
5 papers
eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in Python
Uwe Schmitt, Jethro L. Hemmann, Nicola Zamboni +2
Liquid chromatography-mass spectrometry (LC-MS/MS) data analysis requires adaptable software solutions to meet diverse analytical needs. We present eMZed 3, a modern Python framewo…
pyPESTO: A modular and scalable tool for parameter estimation for dynamic models
Yannik Schälte, Fabian Fröhlich, Paul J. Jost +14
Mechanistic models are important tools to describe and understand biological processes. However, they typically rely on unknown parameters, the estimation of which can be challengi…
Laboratory-Based Correlative Soft X-ray and Fluorescence Microscopy in an Integrated Setup
Julius Reinhard, Sophia Kaleta, Johann Jakob Abel +12
Correlative microscopy is a powerful technique that combines the advantages of multiple imaging modalities to achieve a comprehensive understanding of investigated samples. For exa…
Visualizing the ultra-structure of microorganisms using table-top extreme ultraviolet imaging
Chang Liu, Wilhelm Eschen, Lars Loetgering +10
Table-top extreme ultraviolet (EUV) microscopy offers unique opportunities for label-free investigation of biological samples. Here, we demonstrate ptychographic EUV imaging of two…
Constructing a Knowledge Base for Gene Regulatory Dynamics by Formal Concept Analysis Methods
Johannes Wollbold, Reinhard Guthke, Bernhard Ganter
Our aim is to build a set of rules, such that reasoning over temporal dependencies within gene regulatory networks is possible. The underlying transitions may be obtained by discre…