output
20222026
most citedInitial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments

179 citations

5 papers

q-bio.PE2026

Stochastic Pharmacokinetic Escape: A Field-Theoretic Approach to Fluctuation-Induced Tumor Relapse

Jose de Jesus Bernal-Alvarado, David Delepine, Georges Delepine

Classical mathematical oncology employs deterministic mean-field models predicting that sufficiently high chemotherapy doses drive tumor density to zero. We show that this apparent…

math.OC2025

A constructive approach to strengthen algebraic descriptions of function and operator classes

Anne Rubbens, Julien M. Hendrickx, Adrien Taylor

It is well known that functions (resp. operators) satisfying a property~ on a subset cannot necessarily be extended to a function (resp. operator) satisf…

cs.CY2024★ 4 cited

Learning and teaching biological data science in the Bioconductor community

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva +15

Modern biological research is increasingly data-intensive, leading to a growing demand for effective training in biological data science. In this article, we provide an overview of…

math.OC2023★ 4 cited

Interpolation Constraints for Computing Worst-Case Bounds in Performance Estimation Problems

Anne Rubbens, Nizar Bousselmi, Sebastien Colla +1

The Performance Estimation Problem (PEP) approach consists in computing worst-case performance bounds on optimization algorithms by solving an optimization problem: one maximizes a…

q-bio.OT2022★ 179 cited

Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments

Laurent Gatto, Ruedi Aebersold, Juergen Cox +18

Analyzing proteins from single cells by tandem mass spectrometry (MS) has become technically feasible. While such analysis has the potential to accurately quantify thousands of pro…