157 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- University of LisbonPT5 papers
- KU LeuvenBE2 papers
- University College LondonGB2 papers
- Aalborg UniversityDK1 paper
- Amazon (United States)US1 paper
- Cancer Research UKGB1 paper
- Carl von Ossietzky Universität OldenburgDE1 paper
- Carnegie Mellon UniversityUS1 paper
- Centre de Biologie StructuraleFR1 paper
- Centre de Biophysique MoléculaireFR1 paper
- Centre Inria de l'université de BordeauxFR1 paper
- Centre National de la Recherche ScientifiqueFR1 paper
7 papers
Semantically Rich Local Dataset Generation for Explainable AI in Genomics
Pedro Barbosa, Rosina Savisaar, Alcides Fonseca
Black box deep learning models trained on genomic sequences excel at predicting the outcomes of different gene regulatory mechanisms. Therefore, interpreting these models may provi…
Robust Identification of Target Genes and Outliers in Triple-negative Breast Cancer Data
Pieter Segaert, Marta B. Lopes, Sandra Casimiro +2
Correct classification of breast cancer sub-types is of high importance as it directly affects the therapeutic options. We focus on triple-negative breast cancer (TNBC) which has t…
Sustainable computational science: the ReScience initiative
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre +42
Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results, however computational science lags behind. In…
Modeling the functional network of primary intercellular Ca wave propagation in astrocytes and its application to study drug effects
Marcelo Pires, Frank Raischel, Sandra Vaz +3
We introduce a simple procedure of multivariate signal analysis to uncover the functional connectivity among cells composing a living tissue and describe how to apply it for extrac…
Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis
Miguel O. Bernabeu, Martin Jones, Jens H. Nielsen +8
There is currently limited understanding of the role played by haemodynamic forces on the processes governing vascular development. One of many obstacles to be overcome is being ab…
Mahotas: Open source software for scriptable computer vision
Luis Pedro Coelho
Mahotas is a computer vision library for Python. It contains traditional image processing functionality such as filtering and morphological operations as well as more modern comput…
Stochastic single-gene auto-regulation
Tomás Aquino, Elsa Abranches, Ana Nunes
A detailed stochastic model of single-gene auto-regulation is established and its solutions are explored when mRNA dynamics is fast compared with protein dynamics and in the opposi…