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- University of AmsterdamNL41 papers
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9 papers · 1 filter
Exact results for noise power spectra in linear biochemical reaction networks
Patrick B. Warren, Sorin Tanase-Nicola, Pieter Rein ten Wolde
We present a simple method for determining the exact noise power spectra in linear chemical reaction networks. We apply the method to networks which are representative of biochemic…
Complex response and polariton-like dispersion splitting in periodic metal nanoparticle chains
A. F. Koenderink, A. Polman
We show that guiding of optical signals in chains of metal nanoparticles is subject to a surprisingly complex dispersion relation. Retardation causes the dispersion relation to spl…
Finding the center reliably: robust patterns of developmental gene expression
Martin Howard, Pieter Rein ten Wolde
We investigate a mechanism for the robust identification of the center of a developing biological system. We assume the existence of two morphogen gradients, an activator emanating…
Strongly nonexponential time-resolved fluorescence of quantum-dot ensembles in three-dimensional photonic crystals
Ivan S. Nikolaev, Peter Lodahl, A. Floris van Driel +2
We observe experimentally that ensembles of quantum dots in three-dimensional (3D) photonic crystals reveal strongly nonexponential time-resolved emission. These complex emission d…
Continuum Description of the Cytoskeleton: Ring Formation in the Cell Cortex
Alexander Zumdieck, Marco Cosentino Lagomarsino, Catalin Tanase +4
Motivated by the formation of ring-like filament structures in the cortex of plant and animal cells, we study the dynamics of a two-dimensional layer of cytoskeletal filaments and…
Simulating rare events in equilibrium or non-equilibrium stochastic systems
Rosalind J. Allen, Daan Frenkel, Pieter Rein ten Wolde
We present three algorithms for calculating rate constants and sampling transition paths for rare events in simulations with stochastic dynamics. The methods do not require a prior…