output
20132024
most citedRobust estimation of microbial diversity in theory and in practice

463 citations

researchers with a paper here

Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.

collaborating institutions

5 papers

q-bio.BM2024★ 5 cited

Bayesian Uncertainty Quantification for Anaerobic Digestion models

Antoine Picard-Weibel, Gabriel Capson-Tojo, Benjamin Guedj +1

Uncertainty quantification is critical for ensuring adequate predictive power of computational models used in biology. Focusing on two anaerobic digestion models, this article intr…

physics.bio-ph2021★ 13 cited

A modeling and simulation study of anaerobic digestion in plug-flow reactors

D. B. Panaro, M. R. Mattei, G. Esposito +3

A mathematical model for anaerobic digestion in plug-flow reactors is proposed on the basis of mass balance considerations. The model consists of a system of parabolic partial diff…

q-bio.PE2020★ 2 cited

Bacterial Metabolic Heterogeneity: from Stochastic to Deterministic Models

Carl Graham, Jérôme Harmand, Sylvie Méléard +1

We revisit the modeling of the diauxic growth of a pure microorganism on two distinct sugars which was first described by Monod. Most available models are deterministic and make th…

stat.ML2015★ 6 cited

Bayesian Optimization with Dimension Scheduling: Application to Biological Systems

Doniyor Ulmasov, Caroline Baroukh, Benoit Chachuat +2

Bayesian Optimization (BO) is a data-efficient method for global black-box optimization of an expensive-to-evaluate fitness function. BO typically assumes that computation cost of…

q-bio.PE2013★ 463 cited

Robust estimation of microbial diversity in theory and in practice

Bart Haegeman, Jérôme Hamelin, John Moriarty +3

Quantifying diversity is of central importance for the study of structure, function and evolution of microbial communities. The estimation of microbial diversity has received renew…