activity
20042023
most citedRobust estimation of microbial diversity in theory and in practice

463 citations · 490 across the 13 of their papers we have counts for

collaborators

14 papers

q-bio.PE2023

Toward a comprehensive system for constructing compartmental epidemic models

Darren Flynn-Primrose, Steven C. Walker, Michael Li +3

Compartmental models are valuable tools for investigating infectious diseases. Researchers building such models typically begin with a simple structure where compartments correspon…

q-bio.PE2022

Evaluating undercounts in epidemics: response to Maruotti et al. 2022

Michael Li, Jonathan Dushoff, David J. D. Earn +1

Maruotti et al. 2022 used a mark-recapture approach to estimate bounds on the true number of monkeypox infections in various countries. These approaches are fundamentally flawed; i…

q-bio.PE2021

Testing and Isolation Efficacy: Insights from a Simple Epidemic Model

Ali Gharouni, F. M. Abdelmalek, David J. D. Earn +2

Testing individuals for pathogens can affect the spread of epidemics. Understanding how individual-level processes of sampling and reporting test results can affect community- or p…

stat.ME2021★ 2 cited

pcoxtime: Penalized Cox Proportional Hazard Model for Time-dependent Covariates

Steve Cygu, Jonathan Dushoff, Benjamin M. Bolker

The penalized Cox proportional hazard model is a popular analytical approach for survival data with a large number of covariates. Such problems are especially challenging when cova…

stat.OT2018

I can see clearly now: reinterpreting statistical significance

Jonathan Dushoff, Morgan P. Kain, Benjamin M. Bolker

Null hypothesis significance testing remains popular despite decades of concern about misuse and misinterpretation. We believe that much of the problem is due to language: signific…

q-bio.PE2017

Patterns of Influenza Vaccination Coverage in the United States from 2009 to 2015

Alice P. Y. Chiu, Duo Yu, Jonathan Dushoff +1

Background: Globally, influenza is a major cause of morbidity, hospitalization and mortality. Influenza vaccination has shown substantial protective effectiveness in the United Sta…