output
20152025
most citedDeep learning for temporal data representation in electronic health records: A systematic review of challenges and methodologies

160 citations

25 papers

cs.GR2025★ 2 cited

Light-SQ: Structure-aware Shape Abstraction with Superquadrics for Generated Meshes

Yuhan Wang, Weikai Chen, Zeyu Hu +19

In user-generated-content (UGC) applications, non-expert users often rely on image-to-3D generative models to create 3D assets. In this context, primitive-based shape abstraction o…

eess.AS2025★ 2 cited

Do neonates hear what we measure? Assessing neonatal ward soundscapes at the neonates ears

Bhan Lam, Peijin Esther Monica Fan, Yih Yann Tay +5

Acoustic guidelines for neonatal intensive care units (NICUs) aim to protect vulnerable neonates from noise-induced physiological harm. However, the lack of recognised internationa…

cs.CY2024★ 4 cited

FairFML: Fair Federated Machine Learning with a Case Study on Reducing Gender Disparities in Cardiac Arrest Outcome Prediction

Siqi Li, Qiming Wu, Xin Li +10

Objective: Mitigating algorithmic disparities is a critical challenge in healthcare research, where ensuring equity and fairness is paramount. While large-scale healthcare data exi…

cs.LG2024★ 4 cited

Bridging Data Gaps in Healthcare: A Scoping Review of Transfer Learning in Biomedical Data Analysis

Siqi Li, Xin Li, Kunyu Yu +12

Clinical and biomedical research in low-resource settings often faces significant challenges due to the need for high-quality data with sufficient sample sizes to construct effecti…

cs.CV2024★ 11 cited

Clinical Domain Knowledge-Derived Template Improves Post Hoc AI Explanations in Pneumothorax Classification

Han Yuan, Chuan Hong, Pengtao Jiang +5

Background: Pneumothorax is an acute thoracic disease caused by abnormal air collection between the lungs and chest wall. To address the opaqueness often associated with deep learn…

cs.AI2024★ 1 cited

Developing Federated Time-to-Event Scores Using Heterogeneous Real-World Survival Data

Siqi Li, Yuqing Shang, Ziwen Wang +7

Survival analysis serves as a fundamental component in numerous healthcare applications, where the determination of the time to specific events (such as the onset of a certain dise…

cs.LG2023★ 16 cited

Federated Learning for Clinical Structured Data: A Benchmark Comparison of Engineering and Statistical Approaches

Siqi Li, Di Miao, Qiming Wu +9

Federated learning (FL) has shown promising potential in safeguarding data privacy in healthcare collaborations. While the term "FL" was originally coined by the engineering commun…

cs.LG2023★ 90 cited

Development and validation of an interpretable machine learning-based calculator for predicting 5-year weight trajectories after bariatric surgery: a multinational retrospective cohort SOPHIA study

Patrick Saux, Pierre Bauvin, Violeta Raverdy +31

Background Weight loss trajectories after bariatric surgery vary widely between individuals, and predicting weight loss before the operation remains challenging. We aimed to develo…

cs.LG2023★ 41 cited

Federated and distributed learning applications for electronic health records and structured medical data: A scoping review

Siqi Li, Pinyan Liu, Gustavo G. Nascimento +12

Federated learning (FL) has gained popularity in clinical research in recent years to facilitate privacy-preserving collaboration. Structured data, one of the most prevalent forms…

cs.LG2023★ 13 cited

FedScore: A privacy-preserving framework for federated scoring system development

Siqi Li, Yilin Ning, Marcus Eng Hock Ong +8

We propose FedScore, a privacy-preserving federated learning framework for scoring system generation across multiple sites to facilitate cross-institutional collaborations. The Fed…

cs.LG2022★ 148 cited

Handling missing values in healthcare data: A systematic review of deep learning-based imputation techniques

Mingxuan Liu, Siqi Li, Han Yuan +7

Objective: The proper handling of missing values is critical to delivering reliable estimates and decisions, especially in high-stakes fields such as clinical research. The increas…

cs.LG2022★ 32 cited

A novel interpretable machine learning system to generate clinical risk scores: An application for predicting early mortality or unplanned readmission in a retrospective cohort study

Yilin Ning, Siqi Li, Marcus Eng Hock Ong +4

Risk scores are widely used for clinical decision making and commonly generated from logistic regression models. Machine-learning-based methods may work well for identifying import…

cs.LG2021★ 75 cited

Benchmarking emergency department triage prediction models with machine learning and large public electronic health records

Feng Xie, Jun Zhou, Jin Wee Lee +10

The demand for emergency department (ED) services is increasing across the globe, particularly during the current COVID-19 pandemic. Clinical triage and risk assessment have become…

cs.CV2021★ 9 cited

Multi-Slice Dense-Sparse Learning for Efficient Liver and Tumor Segmentation

Ziyuan Zhao, Zeyu Ma, Yanjie Liu +2

Accurate automatic liver and tumor segmentation plays a vital role in treatment planning and disease monitoring. Recently, deep convolutional neural network (DCNNs) has obtained tr…

cs.CV2021

Class-Incremental Domain Adaptation with Smoothing and Calibration for Surgical Report Generation

Mengya Xu, Mobarakol Islam, Chwee Ming Lim +1

Generating surgical reports aimed at surgical scene understanding in robot-assisted surgery can contribute to documenting entry tasks and post-operative analysis. Despite the impre…

cs.LG2021★ 160 cited

Deep learning for temporal data representation in electronic health records: A systematic review of challenges and methodologies

Feng Xie, Han Yuan, Yilin Ning +5

Objective: Temporal electronic health records (EHRs) can be a wealth of information for secondary uses, such as clinical events prediction or chronic disease management. However, c…

cs.LG2021★ 21 cited

AutoScore-Imbalance: An interpretable machine learning tool for development of clinical scores with rare events data

Han Yuan, Feng Xie, Marcus Eng Hock Ong +7

Background: Medical decision-making impacts both individual and public health. Clinical scores are commonly used among a wide variety of decision-making models for determining the…

cs.LG2021★ 30 cited

AutoScore-Survival: Developing interpretable machine learning-based time-to-event scores with right-censored survival data

Feng Xie, Yilin Ning, Han Yuan +4

Scoring systems are highly interpretable and widely used to evaluate time-to-event outcomes in healthcare research. However, existing time-to-event scores are predominantly created…

physics.flu-dyn2020★ 94 cited

Airborne dispersion of droplets during coughing: a physical model of viral transmission

Hongying Li, Fong Yew Leong, George Xu +4

The Covid-19 pandemic has focused attention on airborne transmission of viruses. Using realistic air flow simulation, we model droplet dispersion from coughing and study the transm…

cs.CV2020

Learning and Reasoning with the Graph Structure Representation in Robotic Surgery

Mobarakol Islam, Lalithkumar Seenivasan, Lim Chwee Ming +1

Learning to infer graph representations and performing spatial reasoning in a complex surgical environment can play a vital role in surgical scene understanding in robotic surgery.…

physics.soc-ph2020★ 7 cited

Modeling Helping Behavior in Emergency Evacuations Using Volunteer's Dilemma Game

Jaeyoung Kwak, Michael H Lees, Wentong Cai +1

People often help others who are in trouble, especially in emergency evacuation situations. For instance, during the 2005 London bombings, it was reported that evacuees helped inju…

physics.soc-ph2020★ 15 cited

Estimating horizontal movement performance of patient beds and the impact on emergency evacuation time

Jaeyoung Kwak, Michael H. Lees, Wentong Cai +2

Emergency evacuation of patients from a hospital can be challenging in the event of a fire. Most emergency evacuation studies are based on the assumption that pedestrians are ambul…

cs.LG2020★ 11 cited

Multi-Instance Multi-Label Learning for Gene Mutation Prediction in Hepatocellular Carcinoma

Kaixin Xu, Ziyuan Zhao, Jiapan Gu +5

Gene mutation prediction in hepatocellular carcinoma (HCC) is of great diagnostic and prognostic value for personalized treatments and precision medicine. In this paper, we tackle…

q-bio.QM2020

Multi-Phase Cross-modal Learning for Noninvasive Gene Mutation Prediction in Hepatocellular Carcinoma

Jiapan Gu, Ziyuan Zhao, Zeng Zeng +10

Hepatocellular carcinoma (HCC) is the most common type of primary liver cancer and the fourth most common cause of cancer-related death worldwide. Understanding the underlying gene…