output
20192025
most citedEnsemble manifold based regularized multi-modal graph convolutional network for cognitive ability prediction

67 citations

23 papers

cs.LG2025★ 1 cited

MvHo-IB: Multi-View Higher-Order Information Bottleneck for Brain Disorder Diagnosis

Kunyu Zhang, Qiang Li, Shujian Yu

Recent evidence suggests that modeling higher-order interactions (HOIs) in functional magnetic resonance imaging (fMRI) data can enhance the diagnostic accuracy of machine learning…

eess.IV2025

MindGrab for BrainChop: Fast and Accurate Skull Stripping for Command Line and Browser

Armina Fani, Mike Doan, Isabelle Le +4

Deployment complexity and specialized hardware requirements hinder the adoption of deep learning models in neuroimaging. We present MindGrab, a lightweight, fully convolutional mod…

q-bio.NC2025★ 2 cited

Functional Correspondences in the Human and Marmoset Visual Cortex During Movie Watching: Insights from Correlation, Redundancy, and Synergy

Qiang Li, Ting Xu, Vince D. Calhoun

The world of beauty is deeply connected to the visual cortex, as perception often begins with vision in both humans and marmosets. In this study, to investigate their functional co…

cs.NE2025★ 7 cited

Rethinking Functional Brain Connectome Analysis: Do Graph Deep Learning Models Help

Keqi Han, Yao Su, Lifang He +4

Graph deep learning models, a class of AI-driven approaches employing a message aggregation mechanism, have gained popularity for analyzing the functional brain connectome in neuro…

q-bio.NC2024★ 1 cited

Correlation of Correlation Networks: High-Order Interactions in the Topology of Brain Networks

Qiang Li, Jingyu Liu, Vince D. Calhoun

To understand collective network behavior in the complex human brain, pairwise correlation networks alone are insufficient for capturing the high-order interactions that extend bey…

q-bio.NC2024★ 2 cited

The Dynamics of Triple Interactions in Resting fMRI: Insights into Psychotic Disorders

Qiang Li, Vince D. Calhoun, Armin Iraji

The human brain dynamically integrated and configured information to adapt to the environment. To capture these changes over time, dynamic second-order functional connectivity was…

q-bio.NC2024★ 30 cited

Integrated Brain Connectivity Analysis with fMRI, DTI, and sMRI Powered by Interpretable Graph Neural Networks

Gang Qu, Ziyu Zhou, Vince D. Calhoun +2

Multimodal neuroimaging modeling has becomes a widely used approach but confronts considerable challenges due to heterogeneity, which encompasses variability in data types, scales,…

cs.AI2024★ 1 cited

Multimodal MRI Accurately Identifies Amyloid Status in Unbalanced Cohorts in Alzheimer's Disease Continuum

Giorgio Dolci, Charles A. Ellis, Federica Cruciani +5

Amyloid- (A) plaques in conjunction with hyperphosphorylated tau proteins in the form of neurofibrillary tangles are the two neuropathological hallmarks of Alzheimer's diseas…

q-bio.QM2024★ 6 cited

An interpretable generative multimodal neuroimaging-genomics framework for decoding Alzheimer's disease

Giorgio Dolci, Federica Cruciani, Md Abdur Rahaman +6

\textbf{Objective:} Alzheimer's disease (AD) is the most prevalent form of dementia worldwide, encompassing a prodromal stage known as Mild Cognitive Impairment (MCI), where patien…

q-bio.NC2024★ 29 cited

DSAM: A Deep Learning Framework for Analyzing Temporal and Spatial Dynamics in Brain Networks

Bishal Thapaliya, Robyn Miller, Jiayu Chen +8

Resting-state functional magnetic resonance imaging (rs-fMRI) is a noninvasive technique pivotal for understanding human neural mechanisms of intricate cognitive processes. Most rs…

cs.LG2023★ 38 cited

Brain Networks and Intelligence: A Graph Neural Network Based Approach to Resting State fMRI Data

Bishal Thapaliya, Esra Akbas, Jiayu Chen +5

Resting-state functional magnetic resonance imaging (rsfMRI) is a powerful tool for investigating the relationship between brain function and cognitive processes as it allows for t…

q-bio.OT2023★ 60 cited

The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Russell A. Poldrack, Christopher J. Markiewicz, Stefan Appelhoff +111

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is mean…

q-bio.NC2023★ 10 cited

Higher-order Organization in the Human Brain from Matrix-Based Rényi's Entropy

Qiang Li, Shujian Yu, Kristoffer H Madsen +2

Pairwise metrics are often employed to estimate statistical dependencies between brain regions, however they do not capture higher-order information interactions. It is critical to…

eess.SP2022★ 4 cited

Coupled CP tensor decomposition with shared and distinct components for multi-task fMRI data fusion

Ricardo Augusto Borsoi, Isabell Lehmann, Mohammad Abu Baker Siddique Akhonda +4

Discovering components that are shared in multiple datasets, next to dataset-specific features, has great potential for studying the relationships between different subjects or tas…

q-bio.QM2022★ 17 cited

Latent Similarity Identifies Important Functional Connections for Phenotype Prediction

Anton Orlichenko, Gang Qu, Gemeng Zhang +5

Objective: Endophenotypes such as brain age and fluid intelligence are important biomarkers of disease status. However, brain imaging studies to identify these biomarkers often enc…

q-bio.NC2022★ 15 cited

Functional Connectivity via Total Correlation: Analytical results in Visual Areas

Qiang Li, Greg Ver Steeg, Jesus Malo

Recent studies invoke the superiority of the multivariate Total Correlation concept over the conventional pairwise measures of functional connectivity in biological networks. Those…

cs.LG2022★ 1 cited

Deep Dynamic Effective Connectivity Estimation from Multivariate Time Series

Usman Mahmood, Zening Fu, Vince Calhoun +1

Recently, methods that represent data as a graph, such as graph neural networks (GNNs) have been successfully used to learn data representations and structures to solve classificat…

q-bio.NC2021★ 18 cited

A deep learning model for data-driven discovery of functional connectivity

Usman Mahmood, Zening Fu, Vince Calhoun +1

Functional connectivity (FC) studies have demonstrated the overarching value of studying the brain and its disorders through the undirected weighted graph of fMRI correlation matri…

cs.LG2021★ 67 cited

Ensemble manifold based regularized multi-modal graph convolutional network for cognitive ability prediction

Gang Qu, Li Xiao, Wenxing Hu +3

Objective: Multi-modal functional magnetic resonance imaging (fMRI) can be used to make predictions about individual behavioral and cognitive traits based on brain connectivity net…

cs.CV2020★ 10 cited

A Psychophysically Oriented Saliency Map Prediction Model

Qiang Li

Visual attention is one of the most significant characteristics for selecting and understanding the outside redundancy world. The human vision system cannot process all information…

q-bio.NC2020★ 1 cited

A Bayesian incorporated linear non-Gaussian acyclic model for multiple directed graph estimation to study brain emotion circuit development in adolescence

Aiying Zhang, Gemeng Zhang, Biao Cai +4

Emotion perception is essential to affective and cognitive development which involves distributed brain circuits. The ability of emotion identification begins in infancy and contin…

cs.LG2020★ 12 cited

Meta-modal Information Flow: A Method for Capturing Multimodal Modular Disconnectivity in Schizophrenia

Haleh Falakshahi, Victor M. Vergara, Jingyu Liu +13

Objective: Multimodal measurements of the same phenomena provide complementary information and highlight different perspectives, albeit each with their own limitations. A focus on…

stat.ML2019

Multidataset Independent Subspace Analysis with Application to Multimodal Fusion

Rogers F. Silva, Sergey M. Plis, Tulay Adali +2

In the last two decades, unsupervised latent variable models---blind source separation (BSS) especially---have enjoyed a strong reputation for the interpretable features they produ…