output
20152025
most citedPrediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses

265 citations

Showing 2021Show all

8 papers · 1 filter

physics.bio-ph2021★ 40 cited

Active morphogenesis of patterned epithelial shells

Diana Khoromskaia, Guillaume Salbreux

Shape transformations of epithelial tissues in three dimensions, which are crucial for embryonic development or in vitro organoid growth, can result from active forces generated wi…

cond-mat.stat-mech2021★ 14 cited

Scaling of Entropy Production under Coarse Graining in Active Disordered Media

Luca Cocconi, Guillaume Salbreux, Gunnar Pruessner

Entropy production plays a fundamental role in the study of non-equilibrium systems by offering a quantitative handle on the degree of time-reversal symmetry breaking. It depends c…

cond-mat.stat-mech2021★ 3 cited

Field theory of survival probabilities, extreme values, first passage times, and mean span of non-Markovian stochastic processes

Benjamin Walter, Gunnar Pruessner, Guillaume Salbreux

We provide a perturbative framework to calculate extreme events of non-Markovian processes, by mapping the stochastic process to a two-species reaction diffusion process in a Doi-P…

physics.ao-ph2021

Fluctuations of water quality time series in rivers follow superstatistics

Benjamin Schäfer, Catherine M. Heppell, Hefin Rhys +1

Superstatistics is a general method from nonequilibrium statistical physics which has been applied to a variety of complex systems, ranging from hydrodynamic turbulence to traffic…

q-bio.QM2021★ 119 cited

Geometry of Gene Regulatory Dynamics

David A. Rand, Archishman Raju, Meritxell Saez +2

Embryonic development leads to the reproducible and ordered appearance of complexity from egg to adult. The successive differentiation of different cell types, that elaborates this…

physics.data-an2021★ 9 cited

Objective comparison of methods to decode anomalous diffusion

Gorka Muñoz-Gil, Giovanni Volpe, Miguel Angel Garcia-March +31

Deviations from Brownian motion leading to anomalous diffusion are found in transport dynamics from quantum physics to life sciences. The characterization of anomalous diffusion fr…

q-bio.BM2021★ 86 cited

Best practices for constructing, preparing, and evaluating protein-ligand binding affinity benchmarks

David F. Hahn, Christopher I. Bayly, Hannah E. Bruce Macdonald +8

Free energy calculations are rapidly becoming indispensable in structure-enabled drug discovery programs. As new methods, force fields, and implementations are developed, assessing…

q-bio.OT2021★ 63 cited

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Glyn Nelson, Ulrike Boehm, Steve Bagley +97

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scie…