output
20152025
most citedPrediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses

265 citations

Showing 2016Show all

8 papers · 1 filter

cond-mat.soft2016★ 18 cited

Dynamic mode locking in a driven colloidal system: experiments and theory

Michael P. N. Juniper, Urs Zimmermann, Arthur V. Straube +4

In this article we examine the dynamics of a colloidal particle driven by a modulated force over a sinusoidal optical potential energy landscape. Coupling between the competing fre…

q-bio.MN2016

On the role of extrinsic noise in microRNA-mediated bimodal gene expression

Marco Del Giudice, Stefano Bo, Silvia Grigolon +1

Several studies highlighted the relevance of extrinsic noise in shaping cell decision making and differentiation in molecular networks. Experimental evidences of phenotypic differe…

physics.bio-ph2016★ 18 cited

Sequential pattern formation governed by signaling gradients

David J. Jörg, Andrew C. Oates, Frank Jülicher

Rhythmic and sequential segmentation of the embryonic body plan is a vital developmental patterning process in all vertebrate species. However, a theoretical framework capturing th…

q-bio.TO2016★ 97 cited

Triangles bridge the scales: Quantifying cellular contributions to tissue deformation

Matthias Merkel, Raphaël Etournay, Marko Popović +3

In this article, we propose a general framework to study the dynamics and topology of cellular networks that capture the geometry of cell packings in two-dimensional tissues. Such…

physics.bio-ph2016★ 56 cited

Active dynamics of tissue shear flow

Marko Popović, Amitabha Nandi, Matthias Merkel +4

We present a hydrodynamic theory to describe shear flows in developing epithelial tissues. We introduce hydrodynamic fields corresponding to state properties of constituent cells a…

q-bio.MN2016★ 96 cited

Intrinsic noise profoundly alters the dynamics and steady state of morphogen-controlled bistable genetic switches

Ruben Perez-Carrasco, Pilar Guerrero, James Briscoe +1

During tissue development, patterns of gene expression determine the spatial arrangement of cell types. In many cases, gradients of secreted signaling molecules - morphogens - guid…

q-bio.MN2016★ 14 cited

Noise Processing by MicroRNA-Mediated Circuits: the Incoherent Feed-Forward Loop, Revisited

Silvia Grigolon, Francesca Di Patti, Andrea De Martino +1

The intrinsic stochasticity of gene expression is usually mitigated in higher eukaryotes by post-transcriptional regulation channels that stabilise the output layer, most notably p…

q-bio.QM2016★ 160 cited

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

Rhys M. Adams, Thierry Mora, Aleksandra M. Walczak +1

Despite the central role that antibodies play in the adaptive immune system and in biotechnology, much remains unknown about the quantitative relationship between an antibody's ami…