output
20162026
most citedEfficient generative modeling of protein sequences using simple autoregressive models

110 citations

Showing 2025Show all

8 papers · 1 filter

physics.plasm-ph2025★ 3 cited

Breaking seed dormancy in Mediterranean Brassica rapa wild populations: is cold plasma treatment efficient?

M. H. Wagner, T. Dufour, A. Geraci +11

Turnip (Brassica rapa) is a native species of the Mediterranean area, spread from northwest France to south Algeria. In this study, dormancy and germination traits were assessed fo…

physics.plasm-ph2025

Treatment of sunflower seeds by cold atmospheric plasma enhances their tolerance to water stress during germination and early seedling development

L. Taras, C. Bailly, T. Dufour

The aim of this study was to investigate the impact of ambient air plasma treatment on both sunflower seed germination and early steps of seedling development under water stress. D…

q-bio.PE2025

Likelihood-free inference of phylogenetic tree posterior distributions

Luc Blassel, Noémie Sauvage, Pierre Barrat-Charlaix +3

Phylogenetic inference, the task of reconstructing how related sequences evolved from common ancestors, is a central objective in evolutionary genomics. The current state-of-the-ar…

cs.CV2025★ 3 cited

SHREC 2025: Protein surface shape retrieval including electrostatic potential

Taher Yacoub, Camille Depenveiller, Atsushi Tatsuma +25

This SHREC 2025 track dedicated to protein surface shape retrieval involved 9 participating teams. We evaluated the performance in retrieval of 15 proposed methods on a large datas…

cs.LG2025★ 2 cited

Bottom-up Iterative Anomalous Diffusion Detector (BI-ADD)

Junwoo Park, Nataliya Sokolovska, Clément Cabriel +2

In recent years, the segmentation of short molecular trajectories with varying diffusive properties has drawn particular attention of researchers, since it allows studying the dyna…

math.AP2025★ 1 cited

Strongly nonlinear age structured equation,time-elapsed model and large delays

Benoît Perthame, Delphine Salort, Clément Rieutord

The time-elapsed model for neural networks is a nonlinear age structured equationwhere the renewal term describes the network activity and influences the dischargerate, possibly wi…