output
20112025
most citedMapping the Human Body at Cellular Resolution -- The NIH Common Fund Human BioMolecular Atlas Program

690 citations

8 papers

q-bio.NC2025★ 119 cited

KMT2B-related disorders: expansion of the phenotypic spectrum and long-term efficacy of deep brain stimulation

L Cif, D Demailly, JP Lin +112

Heterozygous mutations in KMT2B are associated with an early-onset, progressive, and often complex dystonia (DYT28). Key characteristics of typical disease include focal motor feat…

cs.DL2024★ 5 cited

Ensuring Adherence to Standards in Experiment-Related Metadata Entered Via Spreadsheets

Martin J. O'Connor, Josef Hardi, Marcos Martínez-Romero +5

Scientists increasingly recognize the importance of providing rich, standards-adherent metadata to describe their experimental results. Despite the availability of sophisticated to…

q-bio.GN2024★ 2 cited

MetaCompass: Reference-guided Assembly of Metagenomes

Tu Luan, Victoria Cepeda, Bo Liu +8

Metagenomic studies have primarily relied on de novo assembly for reconstructing genes and genomes from microbial mixtures. While reference-guided approaches have been employed in…

q-bio.OT2019★ 690 cited

Mapping the Human Body at Cellular Resolution -- The NIH Common Fund Human BioMolecular Atlas Program

Michael P Snyder, Shin Lin, Amanda Posgai +22

Transformative technologies are enabling the construction of three dimensional (3D) maps of tissues with unprecedented spatial and molecular resolution. Over the next seven years,…

cs.DS2018★ 7 cited

An efficient counting method for the colored triad census

Jeffrey Lienert, Laura Koehly, Felix Reed-Tsochas +1

The triad census is an important approach to understand local structure in network science, providing comprehensive assessments of the observed relational configurations between tr…

q-bio.GN2015★ 147 cited

Detection and Visualization of Differential Splicing in RNA-Seq Data with JunctionSeq

Stephen W. Hartley, James C. Mullikin

Although RNA-Seq data provide unprecedented isoform-level expression information, detection of alternative isoform regulation (AIR) remains difficult, particularly when working wit…

stat.ML2014★ 1 cited

A Permutation Approach for Selecting the Penalty Parameter in Penalized Model Selection

Jeremy Sabourin, William Valdar, Andrew Nobel

We describe a simple, efficient, permutation based procedure for selecting the penalty parameter in the LASSO. The procedure, which is intended for applications where variable sele…

q-bio.GN2011★ 148 cited

Non-alignment comparison of human and high primate genomes

V. M. Kirzhner, S. Frenkel, A. B. Korol

Compositional spectra (CS) analysis based on k-mer scoring of DNA sequences was employed in this study for dot-plot comparison of human and primate genomes. The detection of extend…