112 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Massachusetts Institute of TechnologyUS8 papers
- Harvard UniversityUS4 papers
- Centre National de la Recherche ScientifiqueFR2 papers
- Biologie Computationnelle, Quantitative et SynthétiqueFR1 paper
- Brigham and Women's HospitalUS1 paper
- Broad InstituteUS1 paper
- Consejo Superior de Investigaciones CientíficasES1 paper
- École Normale Supérieure - PSLFR1 paper
- Heidelberg Institute for Theoretical StudiesDE1 paper
- Heidelberg UniversityDE1 paper
- Helmholtz MunichDE1 paper
- IIT@MITUS1 paper
Showing q-bio.QMShow all
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q-bio.QM2020★ 112 cited
PEtab -- interoperable specification of parameter estimation problems in systems biology
Leonard Schmiester, Yannik Schälte, Frank T. Bergmann +26
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has been -- so far -- no broadly supported format for the specification of p…
q-bio.QM2014★ 29 cited
Large Pseudo-Counts and -Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models
J. P. Barton, S. Cocco, E. De Leonardis +1
Mean field (MF) approximation offers a simple, fast way to infer direct interactions between elements in a network of correlated variables, a common, computationally challenging pr…