output
19932026
most citedAssessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures

139 citations

22 papers

cs.CY2026

LERA: Reinstating Judgment as a Structural Precondition for Execution in Automated Systems

Jing, Liu

As automated systems increasingly transition from decision support to direct execution, the problem of accountability shifts from decision quality to execution legitimacy. While op…

cond-mat.soft2025

Brownian motion near a soft surface

Yilin Ye, Yacine Amarouchene, Raphaël Sarfati +2

Brownian motion near soft surfaces is a situation widely encountered in nanoscale and biological physics. However, a complete theoretical description is lacking to date. Here, we t…

eess.SY2024

Maximizing User Connectivity in AI-Enabled Multi-UAV Networks: A Distributed Strategy Generalized to Arbitrary User Distributions

Bowei Li, Yang Xu, Ran Zhang +3

Deep reinforcement learning (DRL) has been extensively applied to Multi-Unmanned Aerial Vehicle (UAV) network (MUN) to effectively enable real-time adaptation to complex, time-vary…

eess.SY2024

Learning with Dynamics: Autonomous Regulation of UAV Based Communication Networks with Dynamic UAV Crew

Ran Zhang, Bowei Li, Liyuan Zhang +3

Unmanned Aerial Vehicle (UAV) based communication networks (UCNs) are a key component in future mobile networking. To handle the dynamic environments in UCNs, reinforcement learnin…

cs.NI2024

When Learning Meets Dynamics: Distributed User Connectivity Maximization in UAV-Based Communication Networks

Bowei Li, Saugat Tripathi, Salman Hosain +4

Distributed management over Unmanned Aerial Vehicle (UAV) based communication networks (UCNs) has attracted increasing research attention. In this work, we study a distributed user…

physics.med-ph2023★ 17 cited

A Prototype Scintillator Real-Time Beam Monitor for Ultra-high Dose Rate Radiotherapy

Daniel S. Levin, Peter S. Friedman, Claudio Ferretti +5

FLASH Radiotherapy (RT) is a potentially new cancer radiotherapy technique where an entire therapeutic dose is delivered in about 0.1 s and at ~1000 times higher dose rate than in…

cs.DC2022★ 1 cited

Real-Time Dynamic Map with Crowdsourcing Vehicles in Edge Computing

Qiang Liu, Tao Han, Jiang +2

Autonomous driving perceives surroundings with line-of-sight sensors that are compromised under environmental uncertainties. To achieve real time global information in high definit…

physics.med-ph2022★ 2 cited

Repair kinetics of DSB-foci induced by proton and helium ion microbeams of different energies

Ana Belchior, João F. Canhoto, Ulrich Giesen +3

In this work, the induction and repair of radiation-induced 53BP1 foci were studied in human umbilical vein endothelial cells irradiated at the PTB microbeam with protons and α-par…

physics.med-ph2022★ 2 cited

A stopping criterion for iterative proton CT image reconstruction based on correlated noise properties

Ethan A. DeJongh, Alexander A. Pryanichnikov, Don F. DeJongh +1

Background: Whereas filtered back projection algorithms for voxel-based CT image reconstruction have noise properties defined by the filter, iterative algorithms must stop at some…

physics.med-ph2022★ 8 cited

Transformative Technology for FLASH Radiation Therapy: A Snowmass 2021 White Paper

Salime Boucher, Eric Esarey, Cameron Geddes +16

Conventional cancer therapies include surgery, radiation therapy, chemotherapy, and, more recently, immunotherapy. These modalities are often combined to improve the therapeutic in…

q-bio.OT2022★ 77 cited

A new Standard DNA damage (SDD) data format

J. Schuemann, A. McNamara, J. W. Warmenhoven +48

Our understanding of radiation induced cellular damage has greatly improved over the past decades. Despite this progress, there are still many obstacles to fully understanding how…

physics.med-ph2021★ 6 cited

A proton simulator for testing implementations of proton CT reconstruction algorithms on GPGPU clusters

Micah Witt, Blake Schultze, Reinhard Schulte +2

Proton computed tomography (pCT) is an image modality that will improve treatment planning for patients receiving proton radiation therapy compared with the current treatment techn…

cs.NI2020

LiveMap: Real-Time Dynamic Map in Automotive Edge Computing

Qiang Liu, Tao Han, Jiang +2

Autonomous driving needs various line-of-sight sensors to perceive surroundings that could be impaired under diverse environment uncertainties such as visual occlusion and extreme…

physics.med-ph2020★ 2 cited

A Comparison of Proton Stopping Power Measured with Proton CT and x-ray CT in Fresh Post-Mortem Porcine Structures

Don F. DeJongh, Ethan A. DeJongh, Victor Rykalin +13

Purpose: Currently, calculations of proton range in proton therapy patients are based on a conversion of CT Hounsfield Units of patient tissues into proton relative stopping power.…

physics.med-ph2017★ 24 cited

Results from a Prototype Proton-CT Head Scanner

R. P. Johnson, V. A. Bashkirov, G. Coutrakon +8

We are exploring low-dose proton radiography and computed tomography (pCT) as techniques to improve the accuracy of proton treatment planning and to provide artifact-free images fo…

physics.acc-ph2017

A Variable-Energy CW Compact Accelerator for Ion Cancer Therapy

C. Johnstone, J. Taylor, R. Edgecock +1

This paper reports on the conclusions of a 2013 Joint DOE/NCI Workshop, and translates clinical accelerator facility requirements into accelerator and beam-delivery technical speci…

physics.med-ph2017★ 23 cited

Sparsity constrained split feasibility for dose-volume constraints in inverse planning of intensity-modulated photon or proton therapy

S. Penfold, R. Zalas, M. Casiraghi +3

A split feasibility formulation for the inverse problem of intensity-modulated radiation therapy (IMRT) treatment planning with dose-volume constraints (DVCs) included in the plann…

q-bio.GN2014★ 139 cited

Assessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures

Sarah A. Munro, Steve P. Lund, P. Scott Pine +30

There is a critical need for standard approaches to assess, report, and compare the technical performance of genome-scale differential gene expression experiments. We assess techni…

math.OC2014★ 4 cited

Feasibility-Seeking and Superiorization Algorithms Applied to Inverse Treatment Planning in Radiation Therapy

R. Davidi, Y. Censor, R. W. Schulte +2

We apply the recently proposed superiorization methodology (SM) to the inverse planning problem in radiation therapy. The inverse planning problem is represented here as a constrai…

math.OC2013

Projected Subgradient Minimization versus Superiorization

Yair Censor, Ran Davidi, Gabor T. Herman +2

The projected subgradient method for constrained minimization repeatedly interlaces subgradient steps for the objective function with projections onto the feasible region, which is…

hep-ex2000★ 15 cited

A search for resonance decays to antineutrino-jet in e^+p scattering at HERA

ZEUS Collaboration, J. Breitweg

A study of the antineutrino-jet mass spectrum in e^+p -> antineutrino+X events at center-of-mass energy 300 GeV has been performed with the ZEUS detector at HERA using an integrate…

nucl-th1993★ 15 cited

K-nucleus quasielastic scattering

C. M. Kormanyos, R. J. Peterson, J. R. Shepard +9

K--nucleus quasielastic cross sections measured for a laboratory kaon beam momentum of 705 MeV/ are presented for 3--momentum transfers of 300 and 500 MeV/. The measured…