225 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Centre National de la Recherche ScientifiqueFR5 papers
- AgroParisTechFR3 papers
- Université Paris-SaclayFR3 papers
- Université Paris-SudFR2 papers
- École Normale Supérieure Paris-SaclayFR1 paper
- École PolytechniqueFR1 paper
- Harvard UniversityUS1 paper
- Institut de Biologie Paris-SeineFR1 paper
- Institut de recherche mathématique de RennesFR1 paper
- Institut des Sciences Moléculaires d'OrsayFR1 paper
- Institut Montpelliérain Alexander GrothendieckFR1 paper
- Institut National de la Recherche AgronomiqueMA1 paper
10 papers
What Makes a Bacterial Model a Good Reservoir Computer? Predicting Performance from Separability and Similarity
Laura Alonso Bartolomé, Jean-Loup Faulon, Xavier Hinaut
Biological systems are promising substrates for computation because they naturally process environmental information through complex internal dynamics. In this study, we investigat…
Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy
Guillaume Ravel, Michel Bergmann, Alain Trubuil +3
Biofilms are spatially organized microorganism colonies embedded in a self-produced matrix, conferring to the microbial community resistance to environmental stresses. Motile bacte…
Message complexity of population protocols
Talley Amir, James Aspnes, David Doty +2
The standard population protocol model assumes that when two agents interact, each observes the entire state of the other agent. We initiate the study of $\textit{message complexit…
Estimating the division rate from indirect measurements of single cells
Marie Doumic, Adélaïde Olivier, Lydia Robert
Is it possible to estimate the dependence of a growing and dividing population on a given trait in the case where this trait is not directly accessible by experimental measurements…
Direct observation of the cell-wall remodeling in adhering Staphylococcus aureus 27217: an AFM study supported by SEM and TEM
Rym Boudjemaa, Karine Steenkeste, Alexis Canette +3
We took benefit from Atomic Force Microscopy (AFM) in the force spectroscopy mode to describe the time evolution-over 24h-of the surface nanotopography and mechanical properties of…
Forced- and Self-Rotation of Magnetic Nanorods Assembly at the Cell Membrane: A Biomagnetic Torsion Pendulum
François Mazuel, Samuel Mathieu, Riccardo Di Corato +5
In order to give insights into how anisotropic nano-objects interact with living cell membranes, and possibly self-assemble, we designed magnetic nanorods with average size around…
Validation of the 3-under-2 principle of cell wall growth in Gram-positive bacteria by simulation of a simple coarse-grained model
M. Dinh, L. Strafella, P. Flores +3
The aim of this work is to propose a first coarse-grained model of Bacillus subtilis cell wall, handling explicitly the existence of multiple layers of peptidoglycans. In this firs…
Investigation of asymmetry in E. coli growth rate
Bernard Delyon, Benoîte de Saporta, Nathalie Krell +1
The data we analyze derives from the observation of numerous cells of the bacterium Escherichia coli (E. coli) growing and dividing. Single cells grow and divide to give birth to t…
Whole genome mapping of 5' RNA ends in bacteria by tagged sequencing : A comprehensive view in Enterococcus faecalis
Nicolas Innocenti, Monica Golumbeanu, Aymeric Fouquier d'Hérouël +8
Enterococcus faecalis is the third cause of nosocomial infections. To obtain the first comprehensive view of transcriptional organizations in this bacterium, we used a modified RNA…
Single-cell analysis of growth in budding yeast and bacteria reveals a common size regulation strategy
Ilya Soifer, Lydia Robert, Ariel Amir
To maintain a constant cell size, dividing cells have to coordinate cell cycle events with cell growth. This coordination has for long been supposed to rely on the existence of siz…