104 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Jackson LaboratoryUS5 papers
- UConn HealthUS4 papers
- European Bioinformatics InstituteGB2 papers
- Wellcome Sanger InstituteGB2 papers
- Beltsville Human Nutrition Research CenterUS1 paper
- Bowling Green State UniversityUS1 paper
- College of WoosterUS1 paper
- ETH ZurichCH1 paper
- European Molecular Biology LaboratoryDE1 paper
- Indian Institute of Science Education and Research MohaliIN1 paper
- Institute for Systems BiologyUS1 paper
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementFR1 paper
9 papers
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)
Sabrina Toro, Anna V Anagnostopoulos, Sue Bello +27
Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in…
Neuronal diversity can improve machine learning for physics and beyond
Anshul Choudhary, Anil Radhakrishnan, John F. Lindner +2
Diversity conveys advantages in nature, yet homogeneous neurons typically comprise the layers of artificial neural networks. Here we construct neural networks from neurons that lea…
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology
Ling Luo, Shankai Yan, Po-Ting Lai +7
Automatic phenotype concept recognition from unstructured text remains a challenging task in biomedical text mining research. Previous works that address the task typically use dic…
Addressing current challenges in cancer immunotherapy with mathematical and computational modeling
Anna Konstorum, Anthony T. Vella, Adam J. Adler +1
The goal of cancer immunotherapy is to boost a patient's immune response to a tumor. Yet, the design of an effective immunotherapy is complicated by various factors, including a po…
The Influence of Canalization on the Robustness of Boolean Networks
Claus Kadelka, Jack Kuipers, Reinhard Laubenbacher
Time- and state-discrete dynamical systems are frequently used to model molecular networks. This paper provides a collection of mathematical and computational tools for the study o…
Identification of control targets in Boolean molecular network models via computational algebra
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar +1
Motivation: Many problems in biomedicine and other areas of the life sciences can be characterized as control problems, with the goal of finding strategies to change a disease or o…
FM stars II: a Fourier view of pulsating binary stars -- determining binary orbital parameters photometrically for highly eccentric cases
Hiromoto Shibahashi, Donald W. Kurtz, Simon J. Murphy
Continuous and precise space-based photometry has made it possible to measure the orbital frequency modulation of pulsating stars in binary systems with extremely high precision ov…
Mean vector testing for high dimensional dependent observations
Deepak Nag Ayyala, Junyong Park, Anindya Roy
When testing for the mean vector in a high dimensional setting, it is generally assumed that the observations are independently and identically distributed. However if the data are…
A Network Biology Approach to Denitrification in Pseudomonas aeruginosa
Seda Arat, George S. Bullerjahn, Reinhard Laubenbacher
Pseudomonas aeruginosa is a metabolically flexible member of the Gammaproteobacteria. Under anaerobic conditions and the presence of nitrate, P. aeruginosa can perform (complete) d…