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5 papers · 1 filter
Tile optimization for area in FPGA based hardware acceleration of peptide identification
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel +1
Advances in life sciences over the last few decades have lead to the generation of a huge amount of biological data. Computing research has become a vital part in driving biologica…
Hardware accelerated protein inference framework
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel
Protein inference plays a vital role in the proteomics study. Two major approaches could be used to handle the problem of protein inference; top-down and bottom-up. This paper pres…
Hardware software co-design of the Aho-Corasick algorithm: Scalable for protein identification?
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel
Pattern matching is commonly required in many application areas and bioinformatics is a major area of interest that requires both exact and approximate pattern matching. Much work…
Accelerating motif finding in DNA sequences with multicore CPUs
P. Perera, R. G. Ragel
Motif discovery in DNA sequences is a challenging task in molecular biology. In computational motif discovery, Planted (l, d) motif finding is a widely studied problem and numerous…
A Simple Software Application for Simulating Commercially Available Solar Panels
Nalika Ulapane, Sunil Abeyratne, Prabath Binduhewa +3
This article addresses the formulation and validation of a simple PC based software application developed for simulating commercially available solar panels. The important feature…