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4 papers · 1 filter
Information theory and adaptation
Ilya Nemenman
In this Chapter, we ask questions (1) What is the right way to measure the quality of information processing in a biological system? and (2) What can real-life organisms do in orde…
Mass Conservation And Inference of Metabolic Networks from High-throughput Mass Spectrometry Data
Pradeep Bandaru, Mukesh Bansal, Ilya Nemenman
We present a step towards the metabolome-wide computational inference of cellular metabolic reaction networks from metabolic profiling data, such as mass spectrometry. The reconstr…
Time-dependent corrections to effective rate and event statistics in Michaelis-Menten kinetics
N. A. Sinitsyn, I. Nemenman
We generalize the concept of the geometric phase in stochastic kinetics to a noncyclic evolution. Its application is demonstrated on kinetics of the Michaelis-Menten reaction. It i…
Converting genetic network oscillations into somite spatial pattern
K. I. Mazzitello, C. M. Arizmendi, H. G. E. Hentschel
In most vertebrate species, the body axis is generated by the formation of repeated transient structures called somites. This spatial periodicity in somitogenesis has been related…