238 citations · 1.9k across the 126 of their papers we have counts for
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AbGPT: De Novo Antibody Design via Generative Language Modeling
Desmond Kuan, Amir Barati Farimani
The adaptive immune response, largely mediated by B-cell receptors (BCRs), plays a crucial role for effective pathogen neutralization due to its diversity and antigen specificity.…
Characterization of Phosphorylated Tau-Microtubule complex with Molecular Dynamics (MD) simulation
Seongwon Kim, Parisa Mollaei, Amir Barati Farimani +1
Alzheimer's Disease (AD), a neurodegenerative disorder, is reported as one of the most severe health and socioeconomic problems in current public health. Tau proteins are assumed t…
Potential Neutralizing Antibodies Discovered for Novel Corona Virus Using Machine Learning
Rishikesh Magar, Prakarsh Yadav, Amir Barati Farimani
The fast and untraceable virus mutations take lives of thousands of people before the immune system can produce the inhibitory antibody. Recent outbreak of novel coronavirus infect…
Binding Pathway of Opiates to Opioid Receptors Revealed by Unsupervised Machine Learning
Amir Barati Farimani, Evan N. Feinberg, Vijay S. Pande
Many important analgesics relieve pain by binding to the -Opioid Receptor (OR), which makes the OR among the most clinically relevant proteins of the G Protein Coupled Rec…
Machine Learning Harnesses Molecular Dynamics to Discover New Opioid Chemotypes
Evan N. Feinberg, Amir Barati Farimani, Rajendra Uprety +4
Computational chemists typically assay drug candidates by virtually screening compounds against crystal structures of a protein despite the fact that some targets, like the Opi…