3 citations · 5 across the 3 of their papers we have counts for
3 papers
Improving spliced alignment for identification of ortholog groups and multiple CDS alignment
Jean-David Aguilar, Safa Jammali, Esaie Kuitche +1
The Spliced Alignment Problem (SAP) that consists in finding an optimal semi-global alignment of a spliced RNA sequence on an unspliced genomic sequence has been largely considered…
Reconstructing protein and gene phylogenies by extending the framework of reconciliation
Esaie Kuitche, Manuel Lafond, Aïda Ouangraoua
The architecture of eukaryotic coding genes allows the production of several different protein isoforms by genes. Current gene phylogeny reconstruction methods make use of a single…
Aligning coding sequences with frameshift extension penalties
Safa Jammali, Esaie Kuitche, Ayoub Rachati +3
Frameshift translation is an important phenomenon that contributes to the appearance of novel Coding DNA Sequences (CDS) and functions in gene evolution, by allowing alternative am…