249 citations · 251 across the 3 of their papers we have counts for
3 papers
An Introduction to Rule-based Modeling of Immune Receptor Signaling
John A. P. Sekar, James R. Faeder
Cells process external and internal signals through chemical interactions. Cells that constitute the immune system (e.g., antigen presenting cell, T-cell, B-cell, mast cell) can ha…
Visualizing Regulation in Rule-based Models
John A. P. Sekar, Jose-Juan Tapia, James R. Faeder
Rule-based modeling is a powerful way to model kinetic interactions in biochemical systems. Rules enable a precise encoding of biochemical interactions at the resolution of sites w…
BioNetGen 2.2: Advances in Rule-Based Modeling
Leonard A. Harris, Justin S. Hogg, Jose-Juan Tapia +7
BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model spe…