activity
20162026
most citedATK-ForceField: A New Generation Molecular Dynamics Software Package

126 citations · 134 across the 15 of their papers we have counts for

collaborators

16 papers

quant-ph2026

Sparse Configuration Interaction for the Electronic Schrödinger Equation Revisited: Complete Basis Set Limit Complexity and Quantum-Encoding Impact

Michael Griebel, Jan Hamaekers

In this article we revisit regularity results for eigenfunctions in the discrete spectrum of the electronic Schrödinger equation and study their consequences for approximation comp…

cond-mat.soft2026

Gaussian Process Regression-based Knowledge Distillation Framework for Simultaneous Prediction of Physical and Mechanical Properties of Epoxy Polymers

Sindu B. S., Jan Hamaekers

Epoxy polymers are widely used due to their multifunctional properties, but machine learning (ML) applications remain limited owing to their complex 3D molecular structure, multi-c…

cond-mat.mtrl-sci2026

Flexible Cutoff Learning: Optimizing Machine Learning Potentials After Training

Rick Oerder, Jan Hamaekers

We introduce Flexible Cutoff Learning (FCL), a method for training machine learning interatomic potentials (MLIPs) whose cutoff radii can be adjusted after training. Unlike convent…

cs.LG2025

Materium: An Autoregressive Approach for Material Generation

Niklas Dobberstein, Jan Hamaekers

We present Materium: an autoregressive transformer for generating crystal structures that converts 3D material representations into token sequences. These sequences include element…

math.NA2024★ 1 cited

On Multilevel Energy-Based Fragmentation Methods

James Barker, Michael Griebel, Jan Hamaekers

Energy-based fragmentation methods approximate the potential energy of a molecular system as a sum of contribution terms built from the energies of particular subsystems. Some such…

cond-mat.mtrl-sci2023

Feature-based prediction of properties of cross-linked epoxy polymers by molecular dynamics and machine learning techniques

Sindu B. S., Jan Hamaekers

Epoxy polymers are used in wide range of applications. The properties and performance of epoxy polymers depend upon various factors like the type of constituents and their proporti…

cs.LG2023

LLamol: A Dynamic Multi-Conditional Generative Transformer for De Novo Molecular Design

Niklas Dobberstein, Astrid Maass, Jan Hamaekers

Generative models have demonstrated substantial promise in Natural Language Processing (NLP) and have found application in designing molecules, as seen in General Pretrained Transf…

physics.comp-ph2023

Predicting Properties of Oxide Glasses Using Informed Neural Networks

Gregor Maier, Jan Hamaekers, Dominik-Sergio Martilotti +1

Many modern-day applications require the development of new materials with specific properties. In particular, the design of new glass compositions is of great industrial interest.…

physics.chem-ph2023

On the Interplay of Subset Selection and Informed Graph Neural Networks

Niklas Breustedt, Paolo Climaco, Jochen Garcke +5

Machine learning techniques paired with the availability of massive datasets dramatically enhance our ability to explore the chemical compound space by providing fast and accurate…

q-fin.ST2023★ 1 cited

Parameterized Neural Networks for Finance

Daniel Oeltz, Jan Hamaekers, Kay F. Pilz

We discuss and analyze a neural network architecture, that enables learning a model class for a set of different data samples rather than just learning a single model for a specifi…

physics.chem-ph2022

Interatomic-Potential-Free, Data-Driven Molecular Dynamics

J. Bulin, J. Hamaekers, M. P. Ariza +1

We present a Data-Driven (DD) paradigm that enables molecular dynamics calculations to be performed directly from sampled force-field data such as obtained, e.g., from ab initio ca…

cond-mat.stat-mech2021

Similarity of particle systems using an invariant root mean square deviation measure

Johannes Bulin, Jan Hamaekers

Determining whether two particle systems are similar is a common problem in particle simulations. When the comparison should be invariant under permutations, orthogonal transformat…

physics.chem-ph2017★ 1 cited

The octet rule in chemical space: Generating virtual molecules

Rafel Israels, Astrid Maaß, Jan Hamaekers

We present a generator of virtual molecules that selects valid chemistry on the basis of the octet rule. Also, we introduce a mesomer group key that allows a fast detection of dupl…

cond-mat.mtrl-sci2017★ 126 cited

ATK-ForceField: A New Generation Molecular Dynamics Software Package

Julian Schneider, Jan Hamaekers, Samuel T. Chill +5

ATK-ForceField is a software package for atomistic simulations using classical interatomic potentials. It is implemented as a part of the Atomistix ToolKit (ATK), which is a Python…

stat.ML2016★ 5 cited

Localized Coulomb Descriptors for the Gaussian Approximation Potential

James Barker, Johannes Bulin, Jan Hamaekers +1

We introduce a novel class of localized atomic environment representations, based upon the Coulomb matrix. By combining these functions with the Gaussian approximation potential ap…

math.NA2016

An Adaptive Multiscale Approach for Electronic Structure Methods

Sambasiva Rao Chinnamsetty, Michael Griebel, Jan Hamaekers

In this paper, we introduce a new scheme for the efficient numerical treatment of the electronic Schrödinger equation for molecules. It is based on the combination of a many-body e…