4 citations · 7 across the 4 of their papers we have counts for
4 papers
Structure-Function Dynamics Hybrid Modeling: RNA Degradation
Hua Zheng, Wei Xie, Paul Whitford +3
RNA structure and functional dynamics play fundamental roles in controlling biological systems. Molecular dynamics simulation, which can characterize interactions at an atomistic l…
Quantifying biomolecular diffusion with a "spherical cow" model
Frederico Campos Freitas, Sandra Byju, Asem Hassan +2
The dynamics of biological polymers, including proteins, RNA, and DNA, occur in very high-dimensional spaces. Many naturally-occurring polymers can navigate a vast phase space and…
Enhanced Septahedral Ordering in Cold Lennard-Jones Fluids
Paul C. Whitford, George D. J. Phillies
We report molecular dynamics calculations on two-component, cold (1.2 > T > 0.56 in natural units), three-dimensional Lennard-Jones fluids. Our system was small (7813 A, 7812 B par…
Diverging Static Length Scales and Clustering in Cold Lennard-Jones Fluids
Paul C. Whitford, George D. J. Phillies
We report molecular-dynamics simulations on a three-dimensional two-component Lennard-Jones fluid. We identify two distinct static length scales. The longer length scale, which div…