3 papers
q-bio.PE2021
Diverse ATPase proteins in mobilomes constitute a large potential sink for prokaryotic host ATP
Hyunjin Shim, Haridha Shivram, Shufei Lei +2
Prokaryote mobilome genomes rely on host machineries for survival and replication. Given that mobile genetic elements (MGEs) derive their energy from host cells, we investigated th…
q-bio.PE2019
Futuristic methods in virus genome evolution using the Third-Generation DNA sequencing and artificial neural networks
Hyunjin Shim
The Third-Generation in DNA sequencing has emerged in the last few years using new technologies that allow the production of long-read sequences. Applications of the Third-Generati…
q-bio.PE2017
Feature learning of virus genome evolution with the nucleotide skip-gram neural network
Hyunjin Shim
Recent studies reveal even the smallest genomes such as viruses evolve through complex and stochastic processes, and the assumption of independent alleles is not valid in most appl…