152 citations · 152 across the 5 of their papers we have counts for
5 papers
Self-assembling T7 phage syringes with modular genomes for targeted delivery of penicillin against beta-lactam-resistant Escherichia coli
Hyunjin Shim
Bacteriophages are promising alternative antimicrobial agents due to their high specificity for host bacteria and minimal immunogenicity in humans. However, their therapeutic appli…
Diverse ATPase proteins in mobilomes constitute a large potential sink for prokaryotic host ATP
Hyunjin Shim, Haridha Shivram, Shufei Lei +2
Prokaryote mobilome genomes rely on host machineries for survival and replication. Given that mobile genetic elements (MGEs) derive their energy from host cells, we investigated th…
Futuristic methods in virus genome evolution using the Third-Generation DNA sequencing and artificial neural networks
Hyunjin Shim
The Third-Generation in DNA sequencing has emerged in the last few years using new technologies that allow the production of long-read sequences. Applications of the Third-Generati…
Feature learning of virus genome evolution with the nucleotide skip-gram neural network
Hyunjin Shim
Recent studies reveal even the smallest genomes such as viruses evolve through complex and stochastic processes, and the assumption of independent alleles is not valid in most appl…
WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data
Matthieu Foll, Hyunjin Shim, Jeffrey D. Jensen
With novel developments in sequencing technologies, time-sampled data are becoming more available and accessible. Naturally, there have been efforts in parallel to infer population…